DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RhoGEF4 and plekhf2

DIOPT Version :10

Sequence 1:NP_648101.1 Gene:RhoGEF4 / 38806 FlyBaseID:FBgn0035761 Length:647 Species:Drosophila melanogaster
Sequence 2:NP_956538.1 Gene:plekhf2 / 393214 ZFINID:ZDB-GENE-040426-884 Length:247 Species:Danio rerio


Alignment Length:315 Identity:54/315 - (17%)
Similarity:100/315 - (31%) Gaps:130/315 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly   273 PSRRVIKEGVLQKITHKGTEIKRYCVLMSDIFMYCKMIKERAPNTVVENSLECCCIFPLKKCKVY 337
            |.|.:|.||||.|:..|..:.::: .|.:||.:|..::.::.......       |.||:...:.
Zfish    32 PGRVLIGEGVLTKLCRKRPKARQF-FLFNDILVYGNIVIQKKKYNKQH-------IIPLESVTID 88

  Fly   338 EMLPGNFKLTCQSDGIIFGSGDVQLSRTWVGFIRDAIDLHVQCRKTLRKDSSKRTPIRKKDMKKF 402
                     |.:.:|        :|...|:                                   
Zfish    89 ---------TVEDEG--------ELRNGWL----------------------------------- 101

  Fly   403 GADYVLSPNKRKCEYDTVFRNKNRSTDSEEETEDSACFSRKRKVASGILRAPNGNPMGKASS--- 464
                :.:|.|....|            :...||.|...|...|..|.:|.....:|.|:.::   
Zfish   102 ----IKTPTKSFAVY------------AATATEKSEWMSHINKCVSDLLEKSGKSPTGEHAAVWV 150

  Fly   465 -SSSSSVSMK----RVAPPPPAPPPPPAVQMRHQPGRPGEL-------------ATASKENRISK 511
             .|.::|.|:    :..|          |..||...:.|.:             :.:||..|:.:
Zfish   151 PDSEATVCMRCQKMKFTP----------VNRRHHCRKCGFVVCGPCSEKKFLLPSQSSKPVRVCE 205

  Fly   512 L-YKKIAAGDKVANVRGILKRSNVPAPNNDHDPSYGFASRYSDSKSYFRAHNVDN 565
            . ||:::.|            :.:| |.:|         .||...|.|.::|:.:
Zfish   206 FCYKQLSTG------------ATLP-PRSD---------SYSRQGSDFGSNNISD 238

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RhoGEF4NP_648101.1 RhoGEF 74..244 CDD:459876
PH-like 269..>311 CDD:473070 13/37 (35%)
PH 277..374 CDD:459697 18/96 (19%)
plekhf2NP_956538.1 PH_Phafin2-like 7..129 CDD:269927 27/172 (16%)
FYVE_PKHF2 148..211 CDD:277294 13/72 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 213..247 9/48 (19%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.