DRSC/TRiP Functional Genomics Resources

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Protein Alignment RhoGEF4 and prhg-1

DIOPT Version :9

Sequence 1:NP_648101.1 Gene:RhoGEF4 / 38806 FlyBaseID:FBgn0035761 Length:647 Species:Drosophila melanogaster
Sequence 2:NP_001122556.1 Gene:prhg-1 / 190810 WormBaseID:WBGene00022391 Length:628 Species:Caenorhabditis elegans


Alignment Length:454 Identity:90/454 - (19%)
Similarity:172/454 - (37%) Gaps:113/454 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    73 QAIQEIISSEKSYL-EQLELLMNFFVRPLKEQAIIDC---SNHTLLFGQIEMIHNLNGEFLREL- 132
            ||:.|:..:|..:| .||.:|.:.:..|||...:..|   ....||||.::.:..::..|.:.. 
 Worm   195 QAVWELFHTELVFLYRQLFVLRDVYKEPLKRCQVEGCLLLVEPDLLFGNLDQLCRISRTFCQSFL 259

  Fly   133 ----EANMEN---------VAHAFLKMAPFFKLYSVYAFDYRGALFIIQDLISKNPVFRKFLEQT 184
                ..:.||         :...|.|.......|..|..:|:..:..:..:..|...|.:| |:.
 Worm   260 SLLSTVDKENWDCTQLVVDLFERFSKGPSTISAYQAYCINYKATMEYLGSIRQKEERFTEF-ERI 323

  Fly   185 ESRPE--VQRKLNSLMIVPIQRVPRYKLLLEQVLLYTSPADADYKLLK------ESVKEIEATAS 241
            ....|  .:.:|..|:|.|:||:.|..:||.::...:...::..|:.|      ||::.|:.:..
 Worm   324 CLADERCFRLQLEDLLIAPLQRITRLPILLREIHKRSEEEESKGKVEKVIDTMTESLRSIDDSVQ 388

  Fly   242 HINTCVEEQEITQYLIHLQNSLVNRTPNI--------------------------VKPSRRVIKE 280
            .::.....|:       ||..:|  .|||                          ..|.|::|.|
 Worm   389 WLHNFERLQQ-------LQTQVV--WPNISDLEPKSYVPDFLRVALSRQFCENLLAHPRRKLIHE 444

  Fly   281 GVLQKITHKGTEIKRYCVLMSDIFMYCKMIKERAPNTVVENSLECCCIFPLKKCKVY----EMLP 341
            |.|: :...|..:..|..|.:|:|:..| .|:.|....|:.       .|:.|.:.|    :.:|
 Worm   445 GPLE-LVENGRTVDMYAFLFNDMFVLTK-TKKCASKLKVKG-------VPIGKSEHYIVQRQPVP 500

  Fly   342 GNFKLTCQSD--------GIIFGSGDVQLSR-------------------TWVGFIRDAIDLHVQ 379
            .:..:.|.:|        .:.|....:.|:|                   .|:...:::|:.:..
 Worm   501 LDSCVFCDADSNDQATPMSLKFAFVIIHLTRYYQVVGIYTLQAADKADKELWIEKFQESIENYES 565

  Fly   380 CRKTLRKDSSKRTPI-RKKDMKKFGADYVLSPNKRKCEYDTVFRNKNRSTDSEEETE---DSAC 439
            .:   .||..|.||: ....:::..:..::|    |.|.::....|.:..:.||:.|   .|.|
 Worm   566 IQ---LKDMLKCTPLFSSLSLRRCSSSRLMS----KSESNSPQLPKEKEKEKEEKKECCSSSTC 622

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RhoGEF4NP_648101.1 RhoGEF 74..244 CDD:279015 42/195 (22%)
PH-like 269..>311 CDD:302622 14/67 (21%)
PH 277..374 CDD:278594 23/127 (18%)
prhg-1NP_001122556.1 RhoGEF 196..385 CDD:279015 42/189 (22%)
PH_PLEKHG7 440..557 CDD:270065 23/125 (18%)
PH 441..561 CDD:278594 23/128 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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