DRSC/TRiP Functional Genomics Resources

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Protein Alignment RhoGEF4 and Arhgef2

DIOPT Version :9

Sequence 1:NP_648101.1 Gene:RhoGEF4 / 38806 FlyBaseID:FBgn0035761 Length:647 Species:Drosophila melanogaster
Sequence 2:XP_006501121.1 Gene:Arhgef2 / 16800 MGIID:103264 Length:1185 Species:Mus musculus


Alignment Length:441 Identity:82/441 - (18%)
Similarity:172/441 - (39%) Gaps:111/441 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 QTPLSFSRELRQVL-QERNLLTAKSRR-KVCSMLDSN---------------------------- 52
            ::||.    |||:| |..:.|..::|. .|.|::|..                            
Mouse   362 ESPLG----LRQILSQSTDSLNMRNRTLSVESLIDEGVEVFYNELMSDFEMDEKDFEADSWSLAV 422

  Fly    53 NSSPIGSPNPDAGKRLGFRRQAIQEIISSEKSYLEQLELLMNFF---------VRPLKEQAIIDC 108
            :||.:.....:..|    ::..|.|:|.:|..::..|:::...|         :.|...|.:..|
Mouse   423 DSSFLQQHKKEVMK----KQDVIYELIQTELHHVRTLKIMTRLFRTGMLEELQMEPEVVQGLFPC 483

  Fly   109 SN-----HTLLFGQI---------------EMIHNLNGEFLRELE-ANMENVAHAFLKMAPFFKL 152
            .:     ||....|:               .:||.|....:.:.. :|.|.:.          |.
Mouse   484 VDELSDIHTRFLNQLLERRRQALCPGSTRNFVIHRLGDLLISQFSGSNAEQMR----------KT 538

  Fly   153 YSVYAFDYRGALFIIQDLISKNPVFRKFL-EQTESRPEVQRKLNSLMIVPIQRVPRYKLLLEQVL 216
            ||.:...:..||.:.::|.:::..|::|: :.|.|....:..:...:::..||:.:|.:|:.::|
Mouse   539 YSEFCSRHTKALKLYKELYARDKRFQQFIRKMTRSAVLKRHGVQECILLVTQRITKYPVLINRIL 603

  Fly   217 LYTSPADADYKLLKESVKEIEATASHINTCVEEQEITQYLIHLQNSLVNRTPNIVKPS------- 274
            ..:...:.:|:.|..::..::...|:::..|.|.|....|..:.|.:..|....|...       
Mouse   604 QNSHGVEEEYQDLASALGLVKELLSNVDQDVHELEKEARLQEIYNRMDPRAQTPVPGKGPFGRDE 668

  Fly   275 ---RRVIKEGVLQKITHKGTEIKRYCVLMSDIFMYCKMIKERAPNTVVENSLECCCIFPLKKCKV 336
               |::|.||.|...|..|.......:||:|:.::   ::|: ....:..||:...:..|:...|
Mouse   669 LLRRKLIHEGCLLWKTATGRFKDVLLLLMTDVLVF---LQEK-DQKYIFTSLDKPSVVSLQNLIV 729

  Fly   337 YEMLPGNFKLTCQSDGI-IFGSGDVQL------SR----TWVGFIRDAIDL 376
            .:       :..|:.|: :..||..::      ||    ||:..|:.::.|
Mouse   730 RD-------IANQAKGMFLISSGPPEMYEVHAASRDDRTTWIRVIQQSVRL 773

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RhoGEF4NP_648101.1 RhoGEF 74..244 CDD:279015 35/200 (18%)
PH-like 269..>311 CDD:302622 11/51 (22%)
PH 277..374 CDD:278594 23/107 (21%)
Arhgef2XP_006501121.1 C1 240..285 CDD:237996
RhoGEF 437..631 CDD:238091 35/203 (17%)
PH_ARHGEF2 671..786 CDD:275428 25/114 (22%)
TIGR02680 <1000..>1072 CDD:274256
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5422
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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