DRSC/TRiP Functional Genomics Resources

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Protein Alignment RhoGEF4 and fgd5b

DIOPT Version :10

Sequence 1:NP_648101.1 Gene:RhoGEF4 / 38806 FlyBaseID:FBgn0035761 Length:647 Species:Drosophila melanogaster
Sequence 2:NP_001352385.1 Gene:fgd5b / 101884144 ZFINID:ZDB-GENE-130925-3 Length:1299 Species:Danio rerio


Alignment Length:236 Identity:56/236 - (23%)
Similarity:109/236 - (46%) Gaps:29/236 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    76 QEIISSEKSYLEQLELL---MNFFVRPLKEQAIID--CSNHTLLFGQIEMIHNLNGEFLRELEAN 135
            :|::.||..:::.|:||   :|...|.:.....:.  |:.|       :.||.|....|:|.:.|
Zfish   792 KELLDSEAQHVKTLQLLYESVNADERLMTVWTEVPDICTLH-------QDIHTLLETRLKEWDQN 849

  Fly   136 MENVAHAFLKMAPFFKLYSVYAFDYRGALFIIQDLISKNPVFRKFLEQTESRPEVQRKLNSLMIV 200
             |.:|...|.....|.::|.|...|...|              .:||..:|.......|...::.
Zfish   850 -EGIAEIILAKKTEFSIFSSYISHYDDKL--------------NYLEHIQSTLSDSVTLKKQLLQ 899

  Fly   201 PIQRVPRYKLLLEQVLLYTSPADADYKLLKESVKEIEATASHINTCVEEQEITQYLIHLQNSLVN 265
            .|.|:.:|::||...|...||...:::..::::..:...|.|.:..::.......|:|:::|::.
Zfish   900 VIVRILQYRMLLTDYLNNLSPDSREFENTQDALVVVSDVAYHASDSLKNGADLMRLVHIEHSVLG 964

  Fly   266 RTPNIVKPSRRVIKEGVLQKITHKGTEIKRYCVLMSDIFMY 306
            .| ::::|.|..:|||.|.|::.|..: .|:..||:||.:|
Zfish   965 LT-DLIQPGRVFVKEGTLMKVSRKCKQ-PRHLFLMNDIMLY 1003

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RhoGEF4NP_648101.1 RhoGEF 74..244 CDD:459876 38/172 (22%)
PH-like 269..>311 CDD:473070 14/38 (37%)
PH 277..374 CDD:459697 12/30 (40%)
fgd5bNP_001352385.1 RhoGEF 791..941 CDD:459876 37/170 (22%)
PH-like 962..1069 CDD:473070 15/44 (34%)
FYVE_like_SF 1096..1161 CDD:333710
PH2_FGD5_FGD6 1207..1293 CDD:270057
Blue background indicates that the domain is not in the aligned region.

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