Sequence 1: | NP_648101.1 | Gene: | RhoGEF4 / 38806 | FlyBaseID: | FBgn0035761 | Length: | 647 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_004914246.1 | Gene: | fgd1 / 100489369 | XenbaseID: | XB-GENE-6453246 | Length: | 913 | Species: | Xenopus tropicalis |
Alignment Length: | 462 | Identity: | 115/462 - (24%) |
---|---|---|---|
Similarity: | 197/462 - (42%) | Gaps: | 108/462 - (23%) |
- Green bases have known domain annotations that are detailed below.
Fly 14 IHSPQT--PLSFSRELRQVLQERNLLTAKSRRKVCSMLDSNNSSPIGSPNPDAG----KRLG--- 69
Fly 70 -FRRQAI----QEIISSEKSYLEQLELLMNFFVRPLKEQAIIDCSNHTL----LFGQIEMIHNLN 125
Fly 126 GEF-LRELEANME------NVAHAFLKMAPFFKLYSVYAFDYRGALFIIQDLISKNPVFRKFLEQ 183
Fly 184 TESRPEVQRK-------LNSLMIVPIQRVPRYKLLLEQVLLYTSPADADYKLLKESVKEIEATAS 241
Fly 242 -HINTCVEEQEITQYLIHLQNSLVNRTPNIVKPSRRVIKEGVLQKITHK-GTEIKRYCVLMSDIF 304
Fly 305 MYC----KMIKER------------------APNTVVENSLECCCIFPLKKCKVYEMLPGNFKLT 347
Fly 348 CQSDGIIFGSGDVQLSRTWVGFIRDAIDLHVQ----CR---KTLRKDS-----------SKR--T 392
Fly 393 PIRKKDM 399 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
RhoGEF4 | NP_648101.1 | RhoGEF | 74..244 | CDD:279015 | 54/192 (28%) |
PH-like | 269..>311 | CDD:302622 | 17/46 (37%) | ||
PH | 277..374 | CDD:278594 | 21/119 (18%) | ||
fgd1 | XP_004914246.1 | PHA03247 | <6..207 | CDD:223021 | |
RhoGEF | 341..525 | CDD:238091 | 54/190 (28%) | ||
PH1_FGD1 | 557..664 | CDD:275392 | 24/129 (19%) | ||
FYVE_FGD1_2_4 | 691..755 | CDD:277280 | 5/9 (56%) | ||
PH2_FGD1-4 | 780..885 | CDD:270056 | |||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 1 | 1.000 | - | - | otm49235 | |
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 1 | 1.000 | - | - | X316 | |
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
3 | 2.910 |