DRSC/TRiP Functional Genomics Resources

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Protein Alignment RhoGEF4 and fgd6

DIOPT Version :10

Sequence 1:NP_648101.1 Gene:RhoGEF4 / 38806 FlyBaseID:FBgn0035761 Length:647 Species:Drosophila melanogaster
Sequence 2:XP_017947731.2 Gene:fgd6 / 100379840 XenbaseID:XB-GENE-5824462 Length:1352 Species:Xenopus tropicalis


Alignment Length:114 Identity:29/114 - (25%)
Similarity:40/114 - (35%) Gaps:26/114 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    69 FVP-----VVVISSKEAAEEVLKTHDLECCSRPETVGTRAISYNFK----DIGFAPYGEDWRTMR 124
            |:|     .|.:||...|......|.:|     ...|....||.|.    :.||....:.||:.|
 Frog   345 FLPNKSKVFVALSSFPGAGNTWARHLIE-----HATGFYTGSYYFDGTLYNKGFKGEKDHWRSRR 404

  Fly   125 KLSV---------VELFSSKKL---QSFRYIREEENDLCVKKLSDLASR 161
            .:.|         :|:|.|..|   ..:|.:..|.|..|...|...|.|
 Frog   405 TICVKTHESGRREIEMFDSAILLIRNPYRSLVAEFNRKCAGHLGYAADR 453

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RhoGEF4NP_648101.1 RhoGEF 74..244 CDD:459876 26/104 (25%)
PH-like 269..>311 CDD:473070
PH 277..374 CDD:459697
fgd6XP_017947731.2 RhoGEF 799..982 CDD:459876
PH1_FGD6 1001..1123 CDD:275436
FYVE_FGD6 1140..1200 CDD:277282
PH2_FGD5_FGD6 1258..1346 CDD:270057
Blue background indicates that the domain is not in the aligned region.

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