DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment RpL18 and rpl18

DIOPT Version :9

Sequence 1:	NP_001261501.1	Gene:	RpL18 / 38794	FlyBaseID:	FBgn0035753	Length:	188	Species:	Drosophila melanogaster
Sequence 2:	NP_001003432.1	Gene:	rpl18 / 445038	ZFINID:	ZDB-GENE-040801-165	Length:	182	Species:	Danio rerio

Alignment Length:	181	Identity:	122/181 - (67%)
Similarity:	142/181 - (78%)	Gaps:	0/181 - (0%)

- Green bases have known domain annotations that are detailed below.

  Fly     1 MGIDINHKYDRKVRRTEPKSQDVYLRLLVKLYRFLQRRTNKKFNRIILKRLFMSKINRPPLSLQR 65
            ||:||.|..||||.|.||||||:||||||||||||.||::..||::||:||||||.|||||:|.|
Zfish     1 MGVDIRHNKDRKVHRKEPKSQDIYLRLLVKLYRFLSRRSDAPFNKVILRRLFMSKTNRPPLALSR 65

  Fly    66 IARFFKAANQPESTIVVVGTVTDDARLLVVPKLTVCALHVTQTARERILKAGGEVLTFDQLALRS 130
            :.|..|...:...|.|||||:|||.|:..:|||.||||.||..||.|||||||:::|||||||.|
Zfish    66 LIRKMKLPGRENLTAVVVGTITDDVRIQNIPKLKVCALKVTDRARSRILKAGGQIMTFDQLALTS 130

  Fly   131 PTGKNTLLLQGRRTARTACKHFGKAPGVPHSHTRPYVRSKGRKFERARGRR 181
            |.|:.|:||.|.|..|...:|||||||.|||||:|||||||||||||||||
Zfish   131 PRGRGTVLLSGPRKGRQVYRHFGKAPGTPHSHTKPYVRSKGRKFERARGRR 181

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
RpL18	NP_001261501.1	Ribosomal_L18e	11..188	CDD:299869	116/171 (68%)
rpl18	NP_001003432.1	Ribosomal_L18e	1..181	CDD:299869	120/179 (67%)

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C170576283
Domainoid	1	1.000	249	1.000	Domainoid score	I2086
eggNOG	1	0.900	-	-		E1_COG1727
Hieranoid	1	1.000	-	-
Homologene	1	1.000	-	-		H756
Inparanoid	1	1.050	251	1.000	Inparanoid score	I3208
OMA	1	1.010	-	-		QHG54131
OrthoDB	1	1.010	-	-		D1303996at2759
OrthoFinder	1	1.000	-	-		FOG0002775
OrthoInspector	1	1.000	-	-		oto41702
orthoMCL	1	0.900	-	-		OOG6_100803
Panther	1	1.100	-	-	LDO	PTHR10934
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	1	1.000	-	-		X1864
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	1	0.960	-	-
ZFIN	0	0.000	Not matched by this tool.
	15	14.770