DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Dscam2 and ush2a

DIOPT Version :9

Sequence 1:NP_001261500.1 Gene:Dscam2 / 38788 FlyBaseID:FBgn0265296 Length:2101 Species:Drosophila melanogaster
Sequence 2:XP_009291422.1 Gene:ush2a / 568982 ZFINID:ZDB-GENE-060503-794 Length:5243 Species:Danio rerio


Alignment Length:2181 Identity:462/2181 - (21%)
Similarity:710/2181 - (32%) Gaps:684/2181 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 LNLDNTCSEPFEAHLR-------------GPGFVMEPPGRVEFSNSSGGWLDCSAS-GSPQ---- 60
            |.||.|.:..|...|:             ||..:..|.            ::|:.: |.|:    
Zfish  2985 LTLDPTVTSVFIPDLQPSTQYKLSLTVSNGPHNITSPE------------VNCTTTDGEPEGVFP 3037

  Fly    61 PTVDWVHADGSAVTEIHGVRRVLRNGTLV-------------------------LMPFAAAAYHQ 100
            |.|..::   |....:.....:|.||.:|                         |:|:...:...
Zfish  3038 PEVLTLN---STAVRVMWAPPLLPNGVVVQYSIYLDGRLYGSTGNESGSLEMGGLLPYTVHSIQV 3099

  Fly   101 DVHNTIYRCIASNSVGRIVSRDVQVRAVVAQAYKVDVEVLSAARGCTAILRCVVPTFVKELVRVV 165
            :| .|:|.|:.|||     ::...|....|:.....::|||:..             ||     :
Zfish  3100 EV-CTVYACVKSNS-----TQVTTVEDTPAEISTPHIQVLSSRS-------------VK-----L 3140

  Fly   166 SWVHEPAIYIYPSLQGDGKFHLLPTGEL--------LIHNLQESDESQSF----RC--------- 209
            .|.            ..|:    |.|.|        .:...::....|:|    ||         
Zfish  3141 EWT------------SPGR----PNGILGGYDVWRRTLKRCEDLQTQQTFAPQSRCSYLECPAEQ 3189

  Fly   210 ----RSMHRLTRQVVVSSPTRLRINSHRGIISPSVVEHTAHVQVSQDEGAVLLCVAQGCPSPEYS 270
                ::.:....|:..|......|.||:..       ...::..|:|.|:|  |.......|   
Zfish  3190 DFCGKTCYNPEMQICCSGTVHNLIQSHQCC-------EERYIPASEDSGSV--CCGGQFVQP--- 3242

  Fly   271 WFTHNGAGPLPVLSGPRVRLLGPILAIEAV-------TGED--------SGVYK-CTAGNV---- 315
            ...|...|...||..|     |.:..:::|       .|:.        |||.: |..|.:    
Zfish  3243 LSQHQCCGGYHVLVSP-----GEVCCLDSVEQRVSVGLGDSCCAGRPFVSGVGQICCGGRLYDGF 3302

  Fly   316 -----GGEASAELRLTVATPIQVEI----SPNVLSVHMGGTAEFRC-----LVTSNGSPVGMQNI 366
                 ||:         ..|.:.|.    ...:...|:.|   |.|     :.||..        
Zfish  3303 KSQCCGGQ---------LVPRETECCGDEEEGISYEHVSG---FSCCGEHYINTSTS-------- 3347

  Fly   367 LWYKDGRQLPSSGRVEDTLVVPRVSRENR-GMYQC----VVRRPE----GDTFQATAELQLGDAP 422
             |...|     .|......||     ||| ...:|    |:.:.|    |..|.....:....||
Zfish  3348 -WCCTG-----PGGESKVHVV-----ENRTASLKCCWSEVIDQEEQCCNGVGFNPLTSVCADRAP 3401

  Fly   423 PVLLYSFIEQTLQPGPAVSLKCSAAG-------NPTPQI-SWTLDG-FP--LPSNGRFMIGQYIT 476
            ..:|   |.:..:|.....:..:|..       :||..| :|...| ||  .||:........:.
Zfish  3402 AGIL---IPEKCRPSTVCPVSVAAGSFCGLCDFSPTQSICTWVPSGQFPEHTPSSSAAAEAPSVV 3463

  Fly   477 VHGD--------VISHVNISHVMVEDGGEYACIAENRAGRVQHAARLNIYGLPY-----IRLIPK 528
            .|..        :.|.|...|...:...|.....|.|.|      ..|.:|..:     :|....
Zfish  3464 AHSQLCPSSEELIYSGVANRHTFTDTELEPYSSYEYRVG------VWNSFGRGFSVWTRVRTDED 3522

  Fly   529 VTAVSGETLNLKCPVAGYPIEEIHWERGGRELPDDIRQRVQPDGSLTISPVQKNSDSGVYTCWAR 593
            |.               |.:...:|...|  |.|||   :|.:.|   :|::.|.:...|...  
Zfish  3523 VP---------------YSVSPPNWSHVG--LRDDI---IQLEWS---APIKPNGEISHYVIL-- 3562

  Fly   594 NKQGHSARRSGEVTVIVPPKLSPFQTNILQLN------------------MGDRASLTCSVVK-- 638
             :.|....|..:.:......:.|||..|.||.                  .|:...:...||:  
Zfish  3563 -RDGQERYRGTDHSFTDAGGIRPFQEYIYQLRACTSAGCTDSTKVVAVTVQGEPEGIGAPVVRAL 3626

  Fly   639 GDLPLTINWRKDGRPIDPTQ-------------------HMSVKQVDQYNSILVIENLGSDHTGN 684
            |...|.::|       ||..                   |...:.|..||    :..| ..|| |
Zfish  3627 GPGALRVSW-------DPPDKANGVIKEYRINQTGVGVIHTHTEGVMAYN----VTGL-QPHT-N 3678

  Fly   685 YSCVVRN-SAAEVENSQALLVNVPPRWIVEPVDANV-ERNRHIMLHCQAQGVPTPSIVWK---KA 744
            ||.:|.. :||....||..:...     :|...|.| ...|||.|:..|     ..:.|.   |.
Zfish  3679 YSFIVMACTAAGCGASQPSMGQT-----MEDAPAGVWSMPRHIQLNSSA-----VELHWSDPLKL 3733

  Fly   745 TGSKSGEYEEVR--ERPFTKLLGNGSLLLQHVKEDREGFYLCQANNGIGTGIGK--VIQLKVNS- 804
            .|..|| |..:|  |..||...|..|.....::.:....|..:|..|.|:....  |||..::| 
Zfish  3734 NGLLSG-YRLLRDGELVFTADGGKMSYTDAGLQPNTRYVYELEATTGGGSSRSDRYVIQTPISSP 3797

  Fly   805 ----SPYFSST--SRSVMVKKGDTALLQCA----------VSGDKPINIVWMRSG-------KNT 846
                .||..|.  .|||.|......:...:          ...::|:    :||.       ...
Zfish  3798 ERIPPPYNVSLHGPRSVFVAWSPPGVYNLSFPLEYNILLNAGTERPL----IRSAGLEQFLLLQG 3858

  Fly   847 LNPSTNYKISVKQEATPD--GVSAELQIRTVDATDSGPYFCRASNLYGNDQQLVQLQVQEPPLPP 909
            |:|.|.|.:.| |...||  ||...:.:||.:|...                     .|:||:..
Zfish  3859 LDPYTIYHVQV-QACQPDGCGVGQGVTVRTPEAAPI---------------------AQDPPVTT 3901

  Fly   910 SVLEAAMISSRSVNIKWQPKTLGTGDVTKYIVEFREADHSLPPALFVDQWQQIEVKDPPHFNAMI 974
            :...|.      :.::|.|.....|.:|.|.:..|.|.......:|:  |    .:.|..|....
Zfish  3902 ATGAAV------IEVRWSPPHKPNGIITNYFIYRRPAGTQEELLVFI--W----TEGPLEFIDAS 3954

  Fly   975 ENLKPATRYAFRVIAEGSAGRSAPSQELIVRT---EPQRPAGPPLSLSARPLSSTELLISWVAPL 1036
            ::|.|.|.|.:||.|..|.| ||.|....:||   |||....|    ||.|.|:..||:||..  
Zfish  3955 DSLHPFTEYEYRVAAVNSKG-SASSSWSSIRTLEAEPQGMNAP----SAHPTSAYSLLLSWTQ-- 4012

  Fly  1037 PELRHGDIQGYNVGYKLSSSGNTAYNFTSVSGDGDGGN-GELLLSGLAKFARYTVVVQAFNQVGP 1100
            |...:|.|..|.|.|:...|..| :|.|:|:.....|| .:..:.||..:..|.:.|:|.|  |.
Zfish  4013 PNAPNGVILVYKVVYQKPPSDPT-FNSTTVTALTVLGNVFQAYVFGLEPYTTYNIRVEAVN--GA 4074

  Fly  1101 GPLSEP-TAAQTMEDVPSRPPEDVRCAALS------SQSLQVSWQPPPIYHTNGLLQGYKLIFEP 1158
            |.:|.| |..:|:|..||      ..|..|      .::|.:.|..|.  ..||:::.|.:..| 
Zfish  4075 GQVSSPWTTIRTLEASPS------GLANFSVERREHGRALLLQWAEPA--SPNGVIKMYNIFNE- 4130

  Fly  1159 IIDDIQPSKDEVESRKTTALTMVLTGLRKYTNYSIQVLAHTRMGDGVVSKPLFCHSEEDVPEAPA 1223
              |:::.|        ..|...:...|..||.|::.:.|.|..| ...|.|....:||.:|.:..
Zfish  4131 --DNLEFS--------GLARQFLFRRLEPYTVYTLILEACTEAG-CTRSAPQRVTTEEAIPSSQP 4184

  Fly  1224 DIKVVSSSSQSLYISWLPPNEPNGVITKYSLY-TRVVNGREELNNEKRSLPSQQAY--------- 1278
            ...|....|:|:.:.|.||.:|||.|.:|.|. .|:.:||.. ::|..||.::..:         
Zfish  4185 APTVYQVHSRSVELFWSPPAQPNGRILQYQLLAVRLEDGRVR-SDEDDSLRAKIVFIQNNTQANS 4248

  Fly  1279 --YEAKGLHPHMEYQF--------------WVTASTRVG-------------EGKSSRV------ 1308
              |...||.|...|:|              |:|..|:..             |||.:.|      
Zfish  4249 FSYNMSGLLPWSRYKFRVRVSNAAGFTDSPWLTVQTKQAPPRGLAPPSVSHIEGKPNEVFVAWTP 4313

  Fly  1309 ----SSQITTNRIPARII----SFGGPVVR---------PWRSTVTLPCTAVGKPKREWFKSDVA 1356
                :..:.|.||....|    ||...|..         ...|...:.||..|            
Zfish  4314 PLEPNGVLLTYRIQRDNIGFHFSFDSSVFNYTDVDLNAYTLYSYAIIACTVAG------------ 4366

  Fly  1357 LRQGGLHNSQLLDSGDLIISSLQLADGGNYSCQV-------DNG--------IGTD--------- 1397
            ....|....:.|:.....:.|..|:|..:||..|       .||        :..|         
Zfish  4367 CVTSGPTQIRTLEGAPATVDSPILSDITSYSLNVSWTVPSFQNGEIVVYILKVNNDEVYRGKRLS 4431

  Fly  1398 --------RLTHTLIV-------------------QVPPT---APVLYVTSATSSSILMHWKCGF 1432
                    .:::::|:                   :.||:   ||.|.||.  ..|:.:.|:...
Zfish  4432 VQVLDLQPHVSYSIILTACTNGGCTSSSPILIQTREAPPSGMPAPTLKVTG--PESVEVTWREPV 4494

  Fly  1433 TGNAPITGYTLFYRRANGN-----TDEMQLSRHASSHELKGLMCGSTYQIHLSAQNKVG--TSPT 1490
            ..|..|.||.|   |.||:     ||    :|:   |:.. |:....|...::|.|..|  |||.
Zfish  4495 HPNGVIMGYEL---RRNGSLIYTGTD----TRY---HDFT-LLPSVEYSYTITANNSEGATTSPP 4548

  Fly  1491 STILHVRTQGQSPGHPASTALLAPNSTSLLVRLHSWP----DNGCPLLYFVLQYRAVTDDPDAE- 1550
            :.   .|||..:|...|...|.|....|::|:   |.    .||     .::.|.....|| || 
Zfish  4549 AV---ARTQPSAPSGVAPPRLQALGPFSVMVK---WDPPARPNG-----VIISYSLYKRDP-AEN 4601

  Fly  1551 ----WVLVS-NALKPQRRIVINNLQPSTLYQLRMEAHNVAGISQAEFNFVTLTKD---GDPPPPE 1607
                :|..| ::....|...:|.|:|...|::|:||.::.|.:.::::.:...:.   |.|.|..
Zfish  4602 NVKRFVFASHHSAFQSRSFSLNTLKPYYRYEVRVEACSLLGCAASDWSSIQTLESPPAGQPAPLL 4666

  Fly  1608 IMHRGRSGQTTVIFANINLLIPTIAAVSGMFCTIIMIIVCYRHMLKNAPPLAEQSQIQKESLENR 1672
            .:.....|..||.                              :|..:||.....::....|..:
Zfish  4667 ELQTNPKGLQTVF------------------------------LLSWSPPTEPNGKLLHYELYRK 4701

  Fly  1673 ANSEAAQRERYYATIHKVSMQ-NNDKI-PETSEDISPYATFQLSEAGGNMSQPHHG--GPANTLL 1733
            ..|:...|..........|.. ::||: |.|:.:...:|......||...:|.|.|  .|.....
Zfish  4702 HLSDMESRSVTTLVYSDSSTSCHDDKLQPYTAYEYQVWAVNSAGRAGSPWAQGHTGPAPPEGISS 4766

  Fly  1734 HSFMYHERALAEGCSSPPPAASKNRRRHSRKTEPESEES-------ESDQDQLTSSRTESSNQHE 1791
            ..|:|.....|....|||             |:|....|       ..|..||.|..|.......
Zfish  4767 PKFLYIYSTSAVVDISPP-------------TKPNGIISLYRVFAQNKDSYQLLSEGTSHQQTLH 4818

  Fly  1792 GKIKHSIIYHGAQSST------SSDLSPMSEQKSLP 1821
            |....::...|.:..|      ...||.:..|.|.|
Zfish  4819 GLRPFTVYSVGVEVCTCFLCCSRGPLSELRTQASAP 4854

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam2NP_001261500.1 Ig 51..127 CDD:299845 20/105 (19%)
Ig 138..>203 CDD:299845 10/72 (14%)
I-set 238..327 CDD:254352 21/113 (19%)
Ig 247..327 CDD:299845 21/104 (20%)
I-set 332..418 CDD:254352 20/103 (19%)
IGc2 344..407 CDD:197706 16/76 (21%)
IG_like 432..517 CDD:214653 19/103 (18%)
IGc2 436..507 CDD:197706 18/89 (20%)
I-set 521..610 CDD:254352 16/93 (17%)
IGc2 533..597 CDD:197706 12/63 (19%)
Ig 630..699 CDD:143165 20/90 (22%)
IG_like 714..802 CDD:214653 26/95 (27%)
Ig 725..802 CDD:299845 22/83 (27%)
Ig 823..894 CDD:143165 16/89 (18%)
FN3 906..1006 CDD:238020 25/99 (25%)
FN3 1013..1111 CDD:238020 33/99 (33%)
FN3 1119..1209 CDD:238020 20/95 (21%)
FN3 1219..1313 CDD:238020 32/142 (23%)
Ig 1336..1402 CDD:143165 14/97 (14%)
FN3 1409..1498 CDD:238020 28/98 (29%)
FN3 1515..1588 CDD:238020 21/82 (26%)
ush2aXP_009291422.1 Laminin_G_3 160..297 CDD:290121
Laminin_N 307..528 CDD:295486
EGF_Lam 529..577 CDD:238012
EGF_Lam 586..638 CDD:238012
Laminin_EGF 653..703 CDD:278482
Laminin_EGF 706..756 CDD:278482
EGF_Lam 759..797 CDD:214543
Laminin_EGF 808..857 CDD:278482
EGF_Lam 859..912 CDD:238012
EGF_Lam 913..963 CDD:238012
EGF_Lam 965..1014 CDD:238012
EGF_Lam 1015..1064 CDD:238012
FN3 1177..1253 CDD:238020
FN3 1264..1375 CDD:238020
FN3 1386..1469 CDD:214495
LamG 1537..1699 CDD:238058
LamG 1737..1890 CDD:238058
FN3 1981..2071 CDD:238020
FN3 2163..2253 CDD:238020
FN3 2258..2341 CDD:238020
FN3 2352..2443 CDD:238020
FN3 2447..2544 CDD:238020
FN3 2547..2633 CDD:238020
FN3 2635..2733 CDD:238020
FN3 2743..2807 CDD:238020
FN3 2830..2932 CDD:238020
fn3 2939..3014 CDD:278470 6/28 (21%)
FN3 3032..>3099 CDD:238020 10/69 (14%)
FN3 3542..3611 CDD:238020 13/74 (18%)
FN3 3615..3701 CDD:238020 22/98 (22%)
fn3 3718..3784 CDD:278470 18/71 (25%)
FN3 3801..3887 CDD:238020 20/90 (22%)
FN3 3908..3971 CDD:238020 18/68 (26%)
FN3 3996..4086 CDD:238020 33/98 (34%)
FN3 4186..4284 CDD:238020 26/98 (27%)
fn3 4288..4366 CDD:278470 14/77 (18%)
FN3 4382..4465 CDD:238020 10/82 (12%)
FN3 4470..4553 CDD:238020 28/98 (29%)
FN3 4555..4653 CDD:238020 25/106 (24%)
FN3 4679..4753 CDD:238020 14/103 (14%)
fn3 4760..4830 CDD:278470 16/82 (20%)
FN3 4864..4955 CDD:238020
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.