DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dscam2 and igsf9ba

DIOPT Version :9

Sequence 1:NP_001261500.1 Gene:Dscam2 / 38788 FlyBaseID:FBgn0265296 Length:2101 Species:Drosophila melanogaster
Sequence 2:XP_009289969.2 Gene:igsf9ba / 567389 ZFINID:ZDB-GENE-060503-729 Length:1475 Species:Danio rerio


Alignment Length:1850 Identity:354/1850 - (19%)
Similarity:580/1850 - (31%) Gaps:657/1850 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   333 VEISPNVLSVHMGGTAEFRCLVTSNGSPVGMQN----ILWYKDGRQLP---------------SS 378
            |...|..::...|.:....|.|:   .|:..|.    :.|:|.|..:|               .:
Zfish    26 VREEPQFVTARAGESVVLGCDVS---HPLNGQQTPYVVEWFKFGVPIPFFINFRFYPPHVDPEYA 87

  Fly   379 GRV----EDTLVVPRVSRENRGMYQC--VVRRPEGDTFQ--------ATAELQLGDAPPVLLYSF 429
            ||.    :.:|.:.:|..|::|.|:|  ::...:.|||.        ..|.....|.||    .:
Zfish    88 GRASLHGKASLQIEQVRSEDQGWYECRVLMLEQQYDTFHNGSWVHLTVNAPPTFSDTPP----QY 148

  Fly   430 IEQTLQPGPAVSLKCSAAGNPTPQISWTLDGFPLPSNGRFMIGQYITVHGDVISHVNISHVMVED 494
            :|  .:.|.:::|.|:|.|||.|.::|..:|..|.|..::.:..         ..:.:..:..||
Zfish   149 VE--AREGGSITLTCTAFGNPKPVVTWLREGDQLTSTRKYTVSD---------GSLTVQAITRED 202

  Fly   495 GGEYACIAENRAGRVQHAARLNIYGLPYIRLIPK-VTAVSGETLNLKCPVAGYP---IEEIHWER 555
            .|.|:|.|.:..|...|..||.:.|.|||...|: :|....:.....|....||   ....:||.
Zfish   203 RGAYSCRAHSDQGEALHTTRLLVQGPPYIVTPPENITVNISQNAQFTCQAEAYPGNLTYTWYWEE 267

  Fly   556 GGRELPDDIRQRVQ--PDGSLTISPVQKNSDSGVYTCWARNKQGHSARRSGEVTVIVPPKLSPFQ 618
            ......:|::.||:  .||:|.|..| |..|:|.|||...|..|.|...|..:||..|       
Zfish   268 DNVYFKNDLKLRVRIFIDGTLIIYRV-KPEDAGKYTCSPSNSLGISPSASAYLTVQYP------- 324

  Fly   619 TNILQLNMGDRASLTCSVVKGDLPLTINWRKDGRPIDPTQHMSVKQVDQYNSILVIENLGSDHTG 683
                                                                             
Zfish   325 ----------------------------------------------------------------- 324

  Fly   684 NYSCVVRNSAAEVENSQALLVNVPPRWIVE---------PVDANVERNRHIMLHCQAQGVPTPSI 739
                             |.:||:||...|.         |||||               .|..|:
Zfish   325 -----------------ARVVNMPPVIYVPRKLSGIIRCPVDAN---------------PPVTSV 357

  Fly   740 VWKKATGSKSGEYEEVRERPFTKLLGNGSLLLQHVKEDREGFYLCQANNGIGT-GIGKVIQLKVN 803
            .|:     |.|....:.:.|....:.:||:.:..|.||..|.|.|...|.:|| |......|.:.
Zfish   358 RWE-----KDGYPLRIEKYPGWSQMTDGSIRVAEVTEDSLGTYTCVPYNVLGTMGQSPPATLVLK 417

  Fly   804 SSPYFS-STSRSVMVKKGDTALLQCAVSGDKPI-NIVWMRSGKNTLNPSTNYKISVKQEATPDGV 866
            ..|||: ........:.|...::.||.|||..| .|.|.:.||    ||.:     |....|.| 
Zfish   418 DPPYFNVRPGGEYRQEAGRELVIPCAASGDPEIPTIQWRKVGK----PSRS-----KHNLLPSG- 472

  Fly   867 SAELQIRTVDATDSGPYFCRASNLYGNDQQLVQLQV--QEPPLPPSVLEAAMISSRSVNIKWQPK 929
              .||..::...|.|.:.|.|:|:..:.....:|.|  ..|..|.:|..:|  |:.|.|:.|:|.
Zfish   473 --SLQFVSLSKEDHGEWECVATNVVTSITASTRLFVIGTSPHAPTNVHVSA--STSSANVSWEPG 533

  Fly   930 TLGTGDVTKYI------VEFREADHSLPPALFVDQWQQIEVKDPPHFNAMIENLKPATRYAFRVI 988
            ..|..:.|..:      |:.....|         .|..|.|.....: .:::.|:|.|.|.|.|:
Zfish   534 YDGGFEQTFSVWYGPVKVKNDVGTH---------DWLSIPVPGSQMW-LVVQGLEPKTAYQFSVL 588

  Fly   989 AEGSAGRSAPSQELIVRT---------EPQRPAGPPLSLSARPLSSTELLISWVAPLPELRH-GD 1043
            |:...| :.|..|::..|         ||.....||..|:|. .:...:|::|   ||...| ..
Zfish   589 AQNKLG-TGPFSEVVTVTTGGYPISTPEPLVLLTPPRCLTAN-RTQQGVLLTW---LPPANHTSP 648

  Fly  1044 IQGYNVGYKLSSSGNTAYNFTSVSGDGDGGNGELLLSGLAKFARY---------TVVVQAFNQVG 1099
            |..|.:.::|........:....:      ..|::...|.:.:.|         .:|.::.|.||
Zfish   649 IDRYVIEFRLGEKWEVLDDLIPAT------ETEIIARDLIQDSWYEFRALAIMDDLVSESSNVVG 707

  Fly  1100 -----PGP--------LSEPTAAQTMEDV---------------------------PSRPPEDVR 1124
                 |.|        |::|..|..:..:                           ...||..:.
Zfish   708 VSSTDPFPPTEISDEGLAKPVVAGIVATICFLAAAILFSTLAACFVNKQHRRKLKRKRDPPLSIT 772

  Fly  1125 CAALSSQSLQVSWQPPPIYHTNGLLQGYKLIFEPIIDDIQPSKDEVESRKTTALTMVLTGLRKYT 1189
            ....|.:|      |||:....|:        ||..:  :|.:.......|:             
Zfish   773 HTRKSIES------PPPLTPLPGI--------EPYWE--EPDRSSYRPPSTS------------- 808

  Fly  1190 NYSIQVLAHTRMGDGVVSKPLFCHSEEDVPEAPADIK---VVSSSSQSLYISWLP-PNEPNGVIT 1250
                     .::..|.:|           ||:.|..:   :.|.....||:..|| |.:..    
Zfish   809 ---------PQLSSGKIS-----------PESIASSRPPSLASVGGHGLYVKKLPSPRKEK---- 849

  Fly  1251 KYSLYTRVVNGREELNNEKRSLPSQQ---AYYEAKGLHPHMEYQFWVTASTRVGEGKSSRVSSQI 1312
            :.|||.:.          ||::.|::   :.:||:...|       :...:|..:|:.....:.|
Zfish   850 ELSLYKKT----------KRAITSKKYSVSKHEAEVTTP-------IELISRGPDGRFVMDPNDI 897

  Fly  1313 TTNRIPARIISFGGPVVRPWRSTVTLPCTAVGKPKREWFKSDV--ALRQGGLHNSQLLDSGDL-- 1373
            .::..|.||..|  |.|.                     :||:  ..||....|.   |.|.|  
Zfish   898 DSSLKPRRIEGF--PFVE---------------------ESDLYPEFRQSDEEND---DPGPLPP 936

  Fly  1374 -----------IISS--------------------LQLADGGNYSCQVDNGIGTDRLTHTLIVQV 1407
                       :.||                    :.:::|...     ...|..|::|...| .
Zfish   937 VMATLRPQISPVSSSQESYMQPPAYSPRFQRPMEGMSISEGSRL-----QATGQSRVSHFHRV-F 995

  Fly  1408 PP--------------TAPVLYVTSATSSSILMHWKCGFTGNAPITGYTLFYRRANGNTDEMQLS 1458
            ||              ..|..|:...:..|..|.....:....|....|:...|     :|:::.
Zfish   996 PPGPFYGYIGSGAEVELHPPFYMPDVSPRSSAMSSSPSYPPEGPFRHPTIPEER-----EELRIH 1055

  Fly  1459 RH-ASSHELKGLMCGSTYQIH---LSAQNKVGTSPT-----------------STILHVRTQGQS 1502
            :: ||.|.|.        .:|   .|...::...|.                 |:.|| |...:.
Zfish  1056 QYGASGHALP--------LVHSPPSSRSTEIWQPPDFPFLGQEGPRLALPPRHSSYLH-RDLPEP 1111

  Fly  1503 PGHPA-----STALLAPNSTSLL----VRLH------SWPDNGCPLLYFVLQYRAVTDDPDAEWV 1552
            |.:|:     ||....|:|::.|    .|.|      .:|..|                |.|:.:
Zfish  1112 PPYPSHSRTVSTTSQLPSSSAFLQLEAPRTHLSRSPGRFPPQG----------------PSAKHI 1160

  Fly  1553 LVSNALKPQRRIVINNLQPSTLYQLRMEAHNVAGISQAEFNFVTLTKDGDPPPPEIMHRGRSGQT 1617
            .:.              |..||.|||..||.:                |.|..|      .||.|
Zfish  1161 TMQ--------------QAQTLGQLRHTAHGM----------------GVPVLP------YSGAT 1189

  Fly  1618 TVIFANINLLIPTIAAVSGMFCTIIMIIVCYRHMLKNAPPLAEQSQIQKESLEN-RANSEAAQRE 1681
            |                                      .:...|.:..||.:. |:.::.....
Zfish  1190 T--------------------------------------RMGSPSTLHSESSDGWRSEAQPWMSP 1216

  Fly  1682 RYYATIHKVSMQNNDKIPETSEDISPYATFQLSEAGGNMSQPHHGGPANTLLHSFMYHERALAEG 1746
            |   ...|:.:.....:.:.|. :||......|.         |.|..:.|:.            
Zfish  1217 R---AARKMDLGLQQVVLQPSR-LSPLTQTPPSS---------HAGSPDILVR------------ 1256

  Fly  1747 CSSPPPAASKNRRRHSRKTEPESEESES----DQDQLTSSRTESSNQHEGKIKHSIIYH------ 1801
               |||..|..|...|::. |||....:    .:..|:||...|..|.:...:.|:.|.      
Zfish  1257 ---PPPRPSILRSSRSQEM-PESARHPASVSFSRRSLSSSPATSPTQGQSGQRPSLSYRAHMAFA 1317

  Fly  1802 -GAQSSTSSDLSPMSEQKSLPRRGRSRYHHQQYQFSTNTTPRHH--------------------- 1844
             .|.|..|...||.:|......:..|:....:....:..:|..|                     
Zfish  1318 TAAASYPSQSPSPPAESSDAFGQMPSQRRTDEEMLPSEPSPGEHLGAVRVPAGSESFEALINYCI 1382

  Fly  1845 ------NSNKMNNNTTSNTNTTATNTTATPSTSSNS---NKILSPRGGNLKSISSTFKSQDSIQC 1900
                  ::||.||:........:|:.|..|..|..|   ..:.||   :.|...||.:....:  
Zfish  1383 NKAKKSSANKNNNSRFKKRTDMSTSQTQQPHASQASVQREHLSSP---SKKKWKSTLRKHPCL-- 1442

  Fly  1901 HIPTLVKSPSISTQQQKQFHKQQLQNSSTN 1930
            |:.:|::  .:..::.::|....:...|:|
Zfish  1443 HLSSLLR--WLHPREDRKFLLASMDPVSSN 1470

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam2NP_001261500.1 Ig 51..127 CDD:299845
Ig 138..>203 CDD:299845
I-set 238..327 CDD:254352
Ig 247..327 CDD:299845
I-set 332..418 CDD:254352 23/117 (20%)
IGc2 344..407 CDD:197706 17/87 (20%)
IG_like 432..517 CDD:214653 22/84 (26%)
IGc2 436..507 CDD:197706 18/70 (26%)
I-set 521..610 CDD:254352 30/94 (32%)
IGc2 533..597 CDD:197706 20/68 (29%)
Ig 630..699 CDD:143165 0/68 (0%)
IG_like 714..802 CDD:214653 24/88 (27%)
Ig 725..802 CDD:299845 19/77 (25%)
Ig 823..894 CDD:143165 22/71 (31%)
FN3 906..1006 CDD:238020 25/105 (24%)
FN3 1013..1111 CDD:238020 24/120 (20%)
FN3 1119..1209 CDD:238020 14/89 (16%)
FN3 1219..1313 CDD:238020 20/100 (20%)
Ig 1336..1402 CDD:143165 13/100 (13%)
FN3 1409..1498 CDD:238020 19/123 (15%)
FN3 1515..1588 CDD:238020 16/82 (20%)
igsf9baXP_009289969.2 IG 30..115 CDD:214652 18/87 (21%)
I-set 139..225 CDD:254352 26/100 (26%)
I-set 229..321 CDD:333254 28/92 (30%)
Ig 345..415 CDD:325142 23/89 (26%)
Ig 438..503 CDD:319273 22/76 (29%)
FN3 511..606 CDD:238020 26/107 (24%)
FN3 622..706 CDD:238020 17/93 (18%)
Atrophin-1 <924..1361 CDD:331285 97/578 (17%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.900

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