DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Dscam2 and sdk2b

DIOPT Version :9

Sequence 1:NP_001261500.1 Gene:Dscam2 / 38788 FlyBaseID:FBgn0265296 Length:2101 Species:Drosophila melanogaster
Sequence 2:XP_009305142.1 Gene:sdk2b / 564922 ZFINID:ZDB-GENE-030131-8203 Length:2256 Species:Danio rerio


Alignment Length:2531 Identity:556/2531 - (21%)
Similarity:852/2531 - (33%) Gaps:808/2531 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 WISSRFFVILLLLNLDNTCSEPFEAHLRG------PGFVMEP-PGRVEFSNSSGGWLDCSASGSP 59
            ||     |||||:.|          ||..      |.|..|| |.::....:. ..|.|.|.||.
Zfish    33 WI-----VILLLVLL----------HLASAQDDVPPYFKTEPVPSQLHLERNR-LVLTCMAEGSW 81

  Fly    60 QPTVDWVHADGSAVTEIHGVRRVLRNGTLVLMPFAAAAYHQDVHNTIYRCIASNSVGRIVSRDVQ 124
            .....|:|.|    |||.......|    .|:|....:     |...||||..|.||.::.|..:
Zfish    82 PLEFKWIHND----TEITRFSLEYR----YLIPSLDRS-----HAGFYRCIVRNRVGALLQRRTE 133

  Fly   125 VRAVVAQAYKVDVEVLSAARGCTAILRCVVPTFVKELVRVVSWVHEPAIYIYPSLQGDGKFHLLP 189
            |:.    ||.                                                |.|    
Zfish   134 VQV----AYM------------------------------------------------GSF---- 142

  Fly   190 TGELLIHNLQESDESQSFRCRSMHRLTRQVVVSSPTRLRINSHRGIISPSVVEHTAHVQVSQDEG 254
                     :|.:.:|:                                          |||.||
Zfish   143 ---------EEGERTQA------------------------------------------VSQGEG 156

  Fly   255 AVLLCVAQGC-PSPEYSWFTHNGAGPLPVLSGPRVRL---LGPILAIEAVTGEDSGVYKCTAGN- 314
            ||:......| |.|:.:||......|      |..|:   |...|.|.:....|:|.|...|.| 
Zfish   157 AVIPAPRIRCFPQPQVTWFRDGRKIP------PSSRIAITLDNTLVILSTVAPDAGRYYVQAVND 215

  Fly   315 VGGEASAELRLTV--------ATPI--QVEISPNVLSVHMGGTAEFRCLVTSNGSPVGMQNILWY 369
            ..||......:|:        |.||  .:.|.|...|| :.||:|......:|..|:...:|.|.
Zfish   216 KNGENKTGQHITLSVENVGGPADPIAPTIVIPPRNTSV-ISGTSEVTMECVANARPLIKLSISWK 279

  Fly   370 KDGRQLPSSGRVED-----TLVVPRVSRENRGMYQC--VVRRPEGDTFQATAELQLGDAPPVLLY 427
            ||| .|..|| :.|     |::.|.||  :.|.|:|  |:|........|.|.|.:.:.|     
Zfish   280 KDG-VLVRSG-LSDFNRRLTVLSPAVS--DSGFYECEAVLRSSSVPAVSAGAYLHVLEPP----- 335

  Fly   428 SFIEQ-----TLQPGPAVSLKCSAAGNPTPQISWTLDGFPL----PSNGRFMIGQYITVHGDVIS 483
            .|:::     |.:....|.:.|.|.|.|.|.|.|..|..|:    ....|.:.|..:.|:|    
Zfish   336 QFVKEPEKHITAEMEKVVDIPCQARGVPQPDIVWYKDAVPISPVKTPRYRVLSGGSLQVNG---- 396

  Fly   484 HVNISHVMVEDGGEYACIAENRAGRVQHAARLNIYGLPYIRLIPKVTA-------VSGETLNLKC 541
                  ::.:|.|.:.|.|.|:||.||    .|.| |....:.|.:||       :.|.::.|.|
Zfish   397 ------LLPDDTGMFQCFARNQAGEVQ----TNTY-LAVTSIAPNITAGPSDSTVIDGMSVILHC 450

  Fly   542 PVAGYPIEEIHWERGGR-------ELPDDIRQRVQPDGSLTISPVQKNSDSGVYTCWARNKQGHS 599
            ..:|.|...|.|::|.|       :||   |..:...|||.||| ...||:|.|||.|.|.:|..
Zfish   451 ETSGAPRPAITWQKGERVLASGSVQLP---RFTLLESGSLLISP-SHISDAGTYTCMASNSRGID 511

  Fly   600 ARRSGEVTVIVPPKLS--PFQTNILQLNMGDRASLTCSVVKGDLPLTIN--WRKDGRPIDPTQHM 660
             ..|.::.|....:::  |...::::   |.:|::||.|.. |..:::.  |.|||:.| .||.:
Zfish   512 -EASADLVVWARTRITNPPQDQSVIK---GTKATMTCGVTH-DPSVSVRFVWEKDGQVI-VTQGL 570

  Fly   661 SVKQVDQYNSILVIENLGSDHTGNYSCVV--------RNSAAEV-------ENSQALLVNVPPRW 710
            ...::| .|..|.|....|...|.|:|.|        ||:...|       ||..|:|.:...|.
Zfish   571 PRLRLD-VNGTLHISQTWSGDIGTYTCRVTSVGGNDSRNAHLRVRQLPHAPENPSAVLSSTEKRA 634

  Fly   711 I----VEPVDANVERNRHIMLHCQAQG---------------------VPTPSIVWK-------- 742
            |    .:|.|.|....|:|:...:...                     :|..|..::        
Zfish   635 INLTWAKPFDGNSPLIRYILEVSENNAPWTVLLANIEPESTAVTVNGLIPARSYQFRLCAVNDVG 699

  Fly   743 KATGSKSGEY----EEVRERPFTKLLGNG----SLLLQ-------HVKEDREGFYL--------- 783
            |...||..:.    ||....|...::.:|    |:::|       |......|:.:         
Zfish   700 KGQFSKETDRVSLPEEPPSAPPQNVIASGRTNQSIMIQWQPPPESHQNGILRGYIIRYRLTGLPV 764

  Fly   784 -----------------------------CQANNGIGTGI--GKVIQL-----------KVNSSP 806
                                         ..|.||.|.|:  .||.:.           .|.:.|
Zfish   765 DIQYKNISNPDVTNLLLEDLIIWTNYEIEVAAYNGAGLGVYCHKVTEWTLQGVPTIAPGNVKAEP 829

  Fly   807 YFSSTSR------------------------------------------SVMV------KKGD-- 821
            ..|:|.|                                          ||.|      ||..  
Zfish   830 VNSTTIRFTWTAPNPQFINGINQGYKLLAWEPGKEDETTVVTVRPNFQDSVHVGHIGGLKKFSEY 894

  Fly   822 -TALLQCAVSGDKPINIVWMRSGKNTLNP-----------------STNYKISVKQEATPDGV-- 866
             |::|.....||.|      ||....|..                 .|:.|:|.::....:||  
Zfish   895 YTSVLCFTTPGDGP------RSSPRRLRTHEDTPGAVGHLSFTEILDTSLKVSWREPNEKNGVLT 953

  Fly   867 ---------------------SAELQIRTVDATDSGPYFCRASNLYGNDQ-QLVQLQVQ-----E 904
                                 :..|:.|....|....|....:.:....| ||....:.     |
Zfish   954 GYRISWEEYNRTNTRVTHYLPNVTLEYRVTGLTALTTYTIEVAAMTSKGQGQLSSSTISSGVPPE 1018

  Fly   905 PPLPPSVLEAAMISSRSVNIKWQPKTLGTGDVTKYIVEFREADHSLPPALFV----DQWQQI--E 963
            .|.||:.|..:.|..|:|.::::|...|...::::.||.:         :.|    :.|..:  .
Zfish  1019 LPGPPTNLAISNIGPRTVTLQFKPGYDGKTSISRWQVEAQ---------VGVIGENEDWVMVHQR 1074

  Fly   964 VKDPPHFNAMIENLKPATRYAFRVIAEGSAGRSAPSQ-ELIVRTEPQRPAGPPLSLSARPLSSTE 1027
            ..:|...:..:..|.|.|.|.||:......|.|.||| ...::|....|...|.:::.|..|.|.
Zfish  1075 ANEPDARSLEVSGLNPYTFYRFRMRQVNIVGTSPPSQPSRKIQTLQAPPDMAPANVTLRTASETS 1139

  Fly  1028 LLISWVAPLPELRHG---DIQGYNVGYKLSSSGNTAYNFTSVSGDGDGGNGELLLSGLAKFARYT 1089
            |.:.|| ||||..:.   |..||.|.|..:.:.:.|.    :....|....|..:..|.::..|.
Zfish  1140 LWLRWV-PLPEWEYNGNPDSVGYRVQYSRTGAPSKAL----LHVIADRLEREFTIEDLEEWTEYE 1199

  Fly  1090 VVVQAFNQVGPGPLSEPTAAQTMEDVPSRPPEDVRCAALSSQSLQVSWQPPPIYHTNGLLQGYKL 1154
            |.|||.|.:|.||.|:|...:|.|.|||..|.:|...|.:|.|:.|.|...|....|||:.|||:
Zfish  1200 VRVQAINGIGAGPWSQPVRGRTRESVPSCGPTNVSAFATTSSSILVRWFEVPEPDRNGLILGYKV 1264

  Fly  1155 IFEPIIDDIQPSKDEVESRKTTALTMVLTGLRKYTNYSIQVLAHTRMGDGVVSKP-LFCHSEEDV 1218
            .::....|.......||...:.::.  ||||.||..|.|||||.||:|||..|.| :...:.:||
Zfish  1265 AYKEKDSDSPLQFWTVEGNASHSVQ--LTGLGKYVLYEIQVLAFTRIGDGRPSTPSILERTLDDV 1327

  Fly  1219 PEAPADIKVVSSSSQSLYISWLPPNEPNGVITKYSLYTRVVNGREELNNEKRS------LPSQQA 1277
            |..|..|......:.|:.:.|.||::|||:|..|.:..|       ||:...:      |.|...
Zfish  1328 PGPPVVILFPEVRTTSVRLIWQPPSQPNGIILAYQITYR-------LNSTNSNTATFDVLNSSAR 1385

  Fly  1278 YYEAKGLHPHMEYQFWVTASTRVGEGKSSRVSSQITTNRIPARIISFGGPVVRP----------- 1331
            .|...||.|...|.|.:.|.||.|.|:::......|..|...:      |..||           
Zfish  1386 QYTVTGLRPESVYVFRIRAQTRKGWGEAAEALVVTTEKRARPQ------PTSRPTVPQENVQARS 1444

  Fly  1332 ----WR------STVTLPCTAVGK-PKREWFKSDVALRQGGLHNSQLL-DSGDLIISSLQLADGG 1384
                |.      |.:......|.: |::.|          .:|::.:. :|...|:..|:.....
Zfish  1445 VLLSWEPGSDGLSPIRYYTVQVRELPEKNW----------TVHSASVSHESSSYIVDRLKPFTSY 1499

  Fly  1385 NYSCQVDNGIGTDRLTH-----TLIVQVPPTAP-VLYVTSATSSSILMHW------KCGFTGNAP 1437
            .:..:..|.||....:.     |.:...|..:| :|.||..|::|:|:.|      |.    |..
Zfish  1500 QFRVKATNDIGDSDYSQESEAITTLQDAPDESPTILTVTPHTTTSVLICWQPPPEEKI----NGI 1560

  Fly  1438 ITGYTLFYRR----------------ANGNTDEM-------QLSRHA-SSHELKGLMCGSTYQIH 1478
            :.|:.:.||.                |:.:..|:       .||..: :.:||..|:....|:|.
Zfish  1561 LLGFRIRYRELLYDRLRSFSVHTISSASASWAELTSPYSMRNLSEPSLTQYELDNLLKHKRYEIR 1625

  Fly  1479 LSAQNKVGTSPTSTILHVRTQGQSPGHPASTALL-APNSTSLLVRLHSWPD----------NGCP 1532
            :|..|.||..|||:...|......|..|....:: :..:|...|   :|..          .|..
Zfish  1626 MSVYNAVGEGPTSSPQEVFVGEAVPTAPPQNVIIQSATATQFDV---TWDPPPLETQNGDIQGYK 1687

  Fly  1533 LLYFVLQYRAVTDDPDAEWVLVSNALKPQRRIVINNLQPSTLYQLRMEAHNVAGISQAEFNFVTL 1597
            :.::..|.:..|:.       :.....|:..:.:.||...|.|.:.:.|.|.||           
Zfish  1688 IFFWEYQRKNETEK-------LRTLFLPEGGVKLKNLTGYTTYMISVAAFNAAG----------- 1734

  Fly  1598 TKDGDPPPPEIMHRGRSGQ---TTVIFANINLLIPTIAAVS--------GMFCTIIMIIVCYRHM 1651
              ||...||.   |||:.|   :...|.:.:.|..|...||        |       ||..||.:
Zfish  1735 --DGPRSPPT---RGRTQQAAPSAPSFIHFSELTTTSVNVSWGEPVFPNG-------IIEGYRLI 1787

  Fly  1652 LKNAPPLAEQSQIQKESLENRANSEAAQRERYYATIHKVSMQNNDKIPETSEDISPYATFQL--- 1713
            .:...|:.|.|....:.|.:.:....::       |..|.::.|..:....:|::...|:..   
Zfish  1788 YEPCMPVDESSVACVDCLHSPSPPGVSK-------IVTVDVKGNAPLWLKIKDLADGVTYNFRIR 1845

  Fly  1714 -------SEAGGNMSQPHHGGPANTLLHSFMYHERALAEGCSSPP--PAASKNRRRHSRKTEPES 1769
                   .|...|::.    ||               .||...||  |..|    |:........
Zfish  1846 AKTFTYGPEVEANITT----GP---------------GEGAPGPPGEPFIS----RYGSALTIHW 1887

  Fly  1770 EESESDQDQLTSSRTESSNQHEGK---------------------IKHSIIY-----------HG 1802
            ...:..:..:|....|:....||.                     :|..:.|           :|
Zfish  1888 ANGDPGRAPITRYVIEARPSDEGLWDILIKDIPKEVTSYTFNMDILKQGVSYDFRVIGVNDYGYG 1952

  Fly  1803 AQSSTSSDLSPMSEQKSLPRRGRSRYHHQQYQF------------------------STNTTPRH 1843
            :.|..|..:   |.||..|       .::::.|                        |.....:.
Zfish  1953 SPSQPSPSI---SAQKVAP-------FYEEWWFLVVVALVGLIFILLLVFILIIRGQSKKYAKKS 2007

  Fly  1844 HNSNKMNNNTTSNTNTTATNTTATPSTSSNSNKIL-------------------SPRGGNLKSIS 1889
            .:||..|.|..::....:.:.:..|:...|:.::.                   ||...|.....
Zfish  2008 DSSNNSNCNALTHGEMVSLDESRFPALELNNRRLSVKNSFCRKNGVYTRSPPRPSPGSLNYSDED 2072

  Fly  1890 STFKSQDSIQCHIPTLVKSPS-ISTQQQK---QFHKQQLQNSSTN-----------NSQ------ 1933
            .:.|..|.|.....:|.:.|| ||..|:.   .|....||...|.           |.|      
Zfish  2073 VSTKYNDLIPAESSSLTEKPSEISDSQEALVFSFKTGGLQTLPTQWGSDSEYEVDPNRQKTHSFV 2137

  Fly  1934 -HSSSNPN--SSSLKQQQPLLITPKLHQLEANGQELLGLDGIGNSPLVACMPPSSQFRPIPHKSI 1995
             |..|:|.  :|..:||:.:......:..|:...|          | ..|.||.    |:|....
Zfish  2138 NHYISDPTYYNSWRRQQKGISRAQAYNYTESESGE----------P-EHCAPPP----PLPPLPP 2187

  Fly  1996 MPAHEPPHHHNHSQQSHPHQQQQQQQHPGTLLNPSTAMLSSKFFTAPTLPKXDTANGGSEY 2056
            :|...|       |.|.|..|.|.|  .|:|..|       |....|| |. .::|..|::
Zfish  2188 LPPFPP-------QLSSPTPQSQSQ--TGSLFRP-------KGSRTPT-PSQQSSNPPSQH 2231

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam2NP_001261500.1 Ig 51..127 CDD:299845 24/75 (32%)
Ig 138..>203 CDD:299845 3/64 (5%)
I-set 238..327 CDD:254352 25/93 (27%)
Ig 247..327 CDD:299845 25/84 (30%)
I-set 332..418 CDD:254352 30/92 (33%)
IGc2 344..407 CDD:197706 23/69 (33%)
IG_like 432..517 CDD:214653 24/93 (26%)
IGc2 436..507 CDD:197706 19/74 (26%)
I-set 521..610 CDD:254352 32/102 (31%)
IGc2 533..597 CDD:197706 26/70 (37%)
Ig 630..699 CDD:143165 25/85 (29%)
IG_like 714..802 CDD:214653 25/182 (14%)
Ig 725..802 CDD:299845 21/171 (12%)
Ig 823..894 CDD:143165 16/110 (15%)
FN3 906..1006 CDD:238020 25/106 (24%)
FN3 1013..1111 CDD:238020 31/100 (31%)
FN3 1119..1209 CDD:238020 35/89 (39%)
FN3 1219..1313 CDD:238020 28/99 (28%)
Ig 1336..1402 CDD:143165 10/72 (14%)
FN3 1409..1498 CDD:238020 30/119 (25%)
FN3 1515..1588 CDD:238020 15/82 (18%)
sdk2bXP_009305142.1 IGc2 69..125 CDD:197706 20/69 (29%)
IG_like 70..136 CDD:214653 24/79 (30%)
I-set 147..230 CDD:254352 27/130 (21%)
Ig 156..230 CDD:299845 22/79 (28%)
I-set 242..331 CDD:254352 30/93 (32%)
IGc2 260..313 CDD:197706 18/56 (32%)
I-set 335..424 CDD:254352 29/108 (27%)
Ig 357..424 CDD:299845 25/81 (31%)
I-set 429..519 CDD:254352 31/94 (33%)
Ig 443..519 CDD:299845 28/80 (35%)
I-set 524..613 CDD:254352 25/94 (27%)
Ig 529..613 CDD:299845 25/89 (28%)
FN3 617..707 CDD:238020 16/89 (18%)
fn3 720..803 CDD:278470 10/82 (12%)
FN3 821..917 CDD:238020 18/101 (18%)
FN3 922..1010 CDD:238020 12/87 (14%)
FN3 1020..1114 CDD:238020 25/102 (25%)
fn3 1126..1214 CDD:278470 29/92 (32%)
FN3 1230..1318 CDD:238020 35/89 (39%)
FN3 1328..1421 CDD:238020 28/99 (28%)
FN3 1427..1522 CDD:238020 15/110 (14%)
FN3 1532..1643 CDD:238020 29/114 (25%)
FN3 1653..1746 CDD:238020 22/118 (19%)
FN3 1751..1848 CDD:238020 19/110 (17%)
fn3 1875..1952 CDD:278470 8/80 (10%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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