DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dscam2 and sdk2a

DIOPT Version :9

Sequence 1:NP_001261500.1 Gene:Dscam2 / 38788 FlyBaseID:FBgn0265296 Length:2101 Species:Drosophila melanogaster
Sequence 2:XP_021327143.1 Gene:sdk2a / 561852 ZFINID:ZDB-GENE-091008-1 Length:2224 Species:Danio rerio


Alignment Length:1890 Identity:442/1890 - (23%)
Similarity:713/1890 - (37%) Gaps:442/1890 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   330 PIQVEISPNVLSVHMGGTAEFRCLVT--SNGS-PVGMQNILWYKDGRQLPSSGRVEDTLVVPRVS 391
            |...::.|....:|:.|.   |.::|  :.|| |:..:   |..:|.:| :...:|...|:|.:.
Zfish    51 PPYFKMEPVATQIHLEGN---RVVLTCMAEGSWPLEFK---WLYNGTEL-TRFSLEYRYVIPSLD 108

  Fly   392 RENRGMYQCVVRRPEGDTFQATAELQLGDAPPVLLYSFIE----QTLQPGPAVSLKCSAAGN-PT 451
            |.:.|.|:|:||...|...|.:::||:     ..:..|:|    |.:..|.|..::.....: |.
Zfish   109 RSHAGFYRCIVRNRVGALMQRSSQLQV-----AYMEGFVEAERSQVVSQGEAALIQPPKIHSFPR 168

  Fly   452 PQISWTLDGFPLPSNGRFMIGQYITVHGDVISHVNISHVMVEDGGEYACIA------ENRAGRVQ 510
            |.|:|..||..:|.:.|..    ||:...::    |...:..|.|.|...|      ||:..:..
Zfish   169 PGITWFRDGRKIPPSSRIA----ITLDNTLV----ILSTVAPDAGRYYAQAVNDKNGENKTSQPV 225

  Fly   511 HAARLNIYG-----LPYIRLIPKVTAVSGET--LNLKCPVAGYPIEE--IHWERGG----RELPD 562
            .....|:.|     .|.|.:.||.|:|...|  :.|:|.....|:.:  |.|.:.|    |.|.|
Zfish   226 ILTVENVGGPADPIAPSIIIPPKNTSVMVGTFEVTLECVANARPLIKLSITWRKNGVLVNRGLRD 290

  Fly   563 DIRQRVQPDGSLTIS-PVQKNSDSGVYTCWA--RNKQGHSARRSGEVTVIVPPKLSPFQTNILQL 624
            ..|:       |||| |:.  ||||.|.|.|  |:....|......:.|:..|:........:..
Zfish   291 FGRR-------LTISGPLV--SDSGYYQCEASLRSSSAPSVSAGAYLHVLEHPQFVKEPDRHITA 346

  Fly   625 NMGDRASLTCSVVKGDLPLTINWRKDGRPIDPTQHMSVKQVDQYNSI----LVIENLGSDHTGNY 685
            .|.....:.|. .:|.....|.|.||..||.|.      :..:|..:    |.|..|..|.||.:
Zfish   347 EMEKVVDIPCQ-ARGVPQPDIVWYKDAVPISPV------KTPRYRVLVGGSLQINGLLPDDTGMF 404

  Fly   686 SCVVRNSAAEVE-NSQALLVNVPPRWIVEPVDANVERNRHIMLHCQAQGVPTPSIVWKK-----A 744
            .|..||.|.|:: |:...:.::.|.....|.|:.|.....|:|||:..|.|.|:|.|:|     |
Zfish   405 QCFARNLAGEIQTNTYLAVTSIAPNITAGPSDSAVIDGMSIILHCETSGAPRPAITWQKAERVLA 469

  Fly   745 TGSKSGEYEEVRERPFTKLLGNGSLLL--QHVKEDREGFYLCQANN--GIGTGIGKVI---QLKV 802
            :||       |:...|| ||.:||||:  .|:.:  .|.|.|.|:|  ||......::   :.::
Zfish   470 SGS-------VQLPRFT-LLESGSLLISPSHLLD--AGSYTCMASNSRGIDEASADLVVWARTRI 524

  Fly   803 NSSPYFSSTSRSVMVKKGDTALLQCAVSGDKPINI--VWMRSGKNTLNPSTNYKISVKQEATPDG 865
            .:.|...|      |.||..|.:.|.|:.|..:.:  :|.:.|. .::..::.::.:....|   
Zfish   525 TNPPQDQS------VIKGTKAAMTCGVTHDPSVTVRHIWEKGGA-VIDVKSSPRLRLDSNGT--- 579

  Fly   866 VSAELQIRTVDATDSGPYFCRASNLYGNDQQLVQLQVQEPPLPPSVLEAAMISS--RSVNIKWQP 928
                |.|....:.|.|.|.||.:::.|||.:...|:|::.|..|..|.|.:..|  |::|:.|..
Zfish   580 ----LHISQTWSGDIGTYTCRVTSVGGNDTRNAHLRVRQLPHAPENLIATLSISERRTINLTWAQ 640

  Fly   929 KTLGTGDVTKYIVEFREADHSLPPALFVDQWQQIEVK-DPPHFNAMIENLKPATRYAFRVIAEGS 992
            ...|...:.:||:|..|  ::.|       |..:... :|...:.::..|.||..|.||:.|...
Zfish   641 AFDGNSPLIRYILEVSE--NNAP-------WTVLLANIEPESISVIVGGLIPARSYQFRLCAVND 696

  Fly   993 AGRSAPSQELIVRTEPQR-PAGPPLSLSARPLSSTELLISWVAPLPELRHGDIQGYNVGYKLSSS 1056
            .|:...|:|....:.|:. |:.||.::.|...::..::|.|..|....::|.:|||.:.|.||..
Zfish   697 VGKGQFSRETARVSLPEEPPSAPPQTVIASGRTNQSIMIQWQPPPESHQNGPLQGYIIRYCLSGL 761

  Fly  1057 GNTAY--NFTSVSGDGDGGNGELLLSGLAKFARYTVVVQAFNQVGPGPLSEPTAAQTMEDVPSRP 1119
            .....  |.|    :.|..|  |||..|..:..|.:.|.|:|..|.|..|......|::.||:.|
Zfish   762 PVDCQMKNIT----NPDQTN--LLLEDLIIWTNYEIEVAAYNGAGQGVYSPKVTEWTLQGVPTVP 820

  Fly  1120 PEDVRCAALSSQSLQVSWQPPPIYHTNGLLQGYKLI-FEP------IIDDIQPS-KDEVESRKTT 1176
            |.:|:..|::|.:::.:|..|.....||:.|||||: :||      .:..::|: :|.|.     
Zfish   821 PGNVQAEAVNSTTVRFTWSAPSPQFINGINQGYKLLAWEPGHEEDVTLVTVRPNFQDSVH----- 880

  Fly  1177 ALTMVLTGLRKYTNYSIQVLAHTRMGDGVVSKPLFCHSEEDVPEAPADIKVVSSSSQSLYISWLP 1241
              ...::||:|:|.|...||..|..|||..|......:.||.|.....:........||.:||..
Zfish   881 --VGYISGLKKFTEYFTCVLCFTTPGDGPRSTAQRIRTHEDTPGPVGHLSFTEILDTSLKVSWKD 943

  Fly  1242 PNEPNGVITKYSLYTRVVNGREELNNEK----RSLPSQQAYYEAKGLHPHMEYQFWVTASTRVGE 1302
            |.|.||::|.|.:      ..||.|...    ..||:....|...||.....|...|...|..|:
Zfish   944 PPEKNGILTGYRI------SWEEFNRTNTRVTHYLPNMTQEYRVTGLTALTTYTIQVAGMTNKGQ 1002

  Fly  1303 GK--SSRVSS-----------QITTNRIPARIISF-------GGPVVRPWRSTVTLPCTAVGKPK 1347
            |:  ||.:||           .|..:.|..|.::.       |...:..|  .:......:|: .
Zfish  1003 GQLSSSTISSGVPPEMPGPPTNIAISNISPRSVTLQFKPGYDGKTSISRW--LIEAQIGVIGE-N 1064

  Fly  1348 REWFKSDVALRQGGLHNSQLLDSGDLIISSLQLADGGNYSCQVDNGIGT------DRLTHTLIVQ 1406
            .||    |.:.|  |.|..  |:..|.:..|.......:..:..|.:||      .|...||  |
Zfish  1065 EEW----VMVHQ--LSNEP--DARSLEVQGLNPYTYYRFRMRQVNIVGTSPPSQPSRKIQTL--Q 1119

  Fly  1407 VPP-TAPV-LYVTSATSSSILMHW----KCGFTGNAPITGYTLFYRRAN---GNTDEMQLSRHAS 1462
            .|| .||. :.:.:|:.:|:.:.|    :..:.||..:.||.:.|.|..   |....:...|...
Zfish  1120 APPDIAPANITLRTASETSLWLRWVPLPEWEYNGNPELVGYRVQYSRLGSKVGFLSHIIPDRQER 1184

  Fly  1463 SHELKGLMCGSTYQIHLSAQNKVGTSPTSTILHVRTQGQSPGH-PASTALLAPNSTSLLVRLHSW 1526
            ...::.|...:.|::.:.|.|.:|..|.|..:|.||:...|.. ||:.:..|..|:|:|||   |
Zfish  1185 EFTIEDLEEWTEYEVKVQAFNGIGPGPWSQPVHGRTRESVPSSGPANVSAFATTSSSILVR---W 1246

  Fly  1527 PD------NGCPLLYFVLQYRAVTDDPDAE-----WVLVSNALKPQRRIVINNLQPSTLYQLRME 1580
            .|      ||     .:|.|:.|..:.|||     |.:..|.   ...:.:..|....||::::.
Zfish  1247 GDVPETDRNG-----LILGYKVVYKEKDAESVLHFWTVEGNT---TYSVQLTGLGKYVLYEIQVL 1303

  Fly  1581 AHNVAGISQAEFNFVTLTKDGDPPPPEIMHRG--------------------------------- 1612
            :....|             ||.|..|.|..|.                                 
Zfish  1304 SFTRIG-------------DGMPSSPPIFERTLDDVPGPPVGILFPEVRTSSVRLIWQPPAQPNG 1355

  Fly  1613 ---------RSGQTTVIFANINLLIP--------------------TIAAVSGMFCTIIMIIVCY 1648
                     |...:::..||:::|.|                    |.....|.......::|..
Zfish  1356 IILAYQIAFRRNSSSITSANVDVLNPSARQYTATGLKPESVYVFRLTAQTRKGWGEAAEALVVTT 1420

  Fly  1649 RHMLKNAP---PLAEQSQIQKES--LENRANSEAAQRERYYA-----------TIHKVSMQNNDK 1697
            ....:..|   |:..|.::|..|  |.....|:.....|||.           |:|..|: |::.
Zfish  1421 EKRARPQPTSRPVVPQEEVQARSVLLSWEPGSDGLSPIRYYTIQYRELPDSNWTVHSASV-NHEA 1484

  Fly  1698 IPETSEDISPYATFQL----------------SEAGGNMSQPHHGGPANTLLHSFMYHERALAEG 1746
            .....:.:.|:.::|.                |||...:.......|  |:| |...|.......
Zfish  1485 TSYVIDRLKPFTSYQFRVKATNDIGDSEYSEESEAITTLQDAPDKAP--TIL-SVTPHTTTSVLV 1546

  Fly  1747 CSSPPPAASKN--------RRRHSR---------------------KTEPESEESESDQDQLTSS 1782
            ...|||....|        |.|..|                     .|.|.|..:.| :..||..
Zfish  1547 RWKPPPEEEINGILLGFRVRYRELRYDRLRSFTVRTVNSPAGNWAELTAPYSVRNLS-ESSLTQY 1610

  Fly  1783 RTESSNQHEG-KIKHSI--------------IYHG------------AQSSTSSDLS-----PMS 1815
            ..::.|:|:. :|:.|:              ::.|            .||||::.|.     |..
Zfish  1611 ELDNLNKHKRYEIRLSVYNAVGEGPTSSPQEVFVGEAVPTAAPQNVAIQSSTATQLDVTWDPPPV 1675

  Fly  1816 EQKSLPRRGRSRYHHQQYQFS-TNTTPRHHN------SNKMNN---NTTSNTNTTATNTTATPST 1870
            |.::...:|...|:   ::|. .|.|.|...      |.|:.|   .||...:.:|.|....   
Zfish  1676 EAQNGDIQGYKIYY---WEFQLQNETERLRTLFLPELSVKLKNLTGYTTYMISVSAFNAAGD--- 1734

  Fly  1871 SSNSNKILSPRGGNLKSISSTFKSQDSIQCHIPTLVKSPSISTQQQKQFHKQQLQNSSTNNSQHS 1935
                    .||.                   :||..::...:.......|..:|..:|.|.|...
Zfish  1735 --------GPRS-------------------LPTRGRTQQAAPSAPNFIHFSELTTTSVNMSWGE 1772

  Fly  1936 SSNPN 1940
            ...||
Zfish  1773 PKQPN 1777

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam2NP_001261500.1 Ig 51..127 CDD:299845
Ig 138..>203 CDD:299845
I-set 238..327 CDD:254352
Ig 247..327 CDD:299845
I-set 332..418 CDD:254352 23/88 (26%)
IGc2 344..407 CDD:197706 18/65 (28%)
IG_like 432..517 CDD:214653 20/91 (22%)
IGc2 436..507 CDD:197706 19/77 (25%)
I-set 521..610 CDD:254352 32/99 (32%)
IGc2 533..597 CDD:197706 24/74 (32%)
Ig 630..699 CDD:143165 21/73 (29%)
IG_like 714..802 CDD:214653 33/99 (33%)
Ig 725..802 CDD:299845 30/88 (34%)
Ig 823..894 CDD:143165 15/72 (21%)
FN3 906..1006 CDD:238020 26/102 (25%)
FN3 1013..1111 CDD:238020 28/99 (28%)
FN3 1119..1209 CDD:238020 31/97 (32%)
FN3 1219..1313 CDD:238020 28/110 (25%)
Ig 1336..1402 CDD:143165 14/71 (20%)
FN3 1409..1498 CDD:238020 22/97 (23%)
FN3 1515..1588 CDD:238020 21/83 (25%)
sdk2aXP_021327143.1 IGc2 66..124 CDD:197706 18/64 (28%)
Ig 157..213 CDD:325142 15/63 (24%)
IGc2 259..313 CDD:197706 21/62 (34%)
Ig 352..420 CDD:319273 22/74 (30%)
Ig 442..518 CDD:325142 30/85 (35%)
I-set 523..612 CDD:333254 23/102 (23%)
FN3 616..706 CDD:238020 25/98 (26%)
fn3 719..805 CDD:306538 27/91 (30%)
FN3 820..916 CDD:238020 31/102 (30%)
FN3 921..1009 CDD:238020 25/93 (27%)
FN3 1019..1113 CDD:238020 18/104 (17%)
FN3 1125..1220 CDD:238020 21/94 (22%)
fn3 1229..1314 CDD:306538 26/108 (24%)
FN3 1327..1420 CDD:238020 8/92 (9%)
FN3 1437..1521 CDD:238020 16/84 (19%)
FN3 1530..1642 CDD:238020 22/115 (19%)
FN3 1652..1745 CDD:238020 24/125 (19%)
FN3 1750..1838 CDD:238020 7/28 (25%)
FN3 1871..1942 CDD:238020
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

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