DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dscam2 and sdk2a

DIOPT Version :10

Sequence 1:NP_001261500.1 Gene:Dscam2 / 38788 FlyBaseID:FBgn0265296 Length:2101 Species:Drosophila melanogaster
Sequence 2:XP_073801113.1 Gene:sdk2a / 561852 ZFINID:ZDB-GENE-091008-1 Length:2236 Species:Danio rerio


Alignment Length:1890 Identity:442/1890 - (23%)
Similarity:713/1890 - (37%) Gaps:442/1890 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   330 PIQVEISPNVLSVHMGGTAEFRCLVT--SNGS-PVGMQNILWYKDGRQLPSSGRVEDTLVVPRVS 391
            |...::.|....:|:.|.   |.::|  :.|| |:..:   |..:|.:| :...:|...|:|.:.
Zfish    51 PPYFKMEPVATQIHLEGN---RVVLTCMAEGSWPLEFK---WLYNGTEL-TRFSLEYRYVIPSLD 108

  Fly   392 RENRGMYQCVVRRPEGDTFQATAELQLGDAPPVLLYSFIE----QTLQPGPAVSLKCSAAGN-PT 451
            |.:.|.|:|:||...|...|.:::||:     ..:..|:|    |.:..|.|..::.....: |.
Zfish   109 RSHAGFYRCIVRNRVGALMQRSSQLQV-----AYMEGFVEAERSQVVSQGEAALIQPPKIHSFPR 168

  Fly   452 PQISWTLDGFPLPSNGRFMIGQYITVHGDVISHVNISHVMVEDGGEYACIA------ENRAGRVQ 510
            |.|:|..||..:|.:.|..    ||:...::    |...:..|.|.|...|      ||:..:..
Zfish   169 PGITWFRDGRKIPPSSRIA----ITLDNTLV----ILSTVAPDAGRYYAQAVNDKNGENKTSQPV 225

  Fly   511 HAARLNIYG-----LPYIRLIPKVTAVSGET--LNLKCPVAGYPIEE--IHWERGG----RELPD 562
            .....|:.|     .|.|.:.||.|:|...|  :.|:|.....|:.:  |.|.:.|    |.|.|
Zfish   226 ILTVENVGGPADPIAPSIIIPPKNTSVMVGTFEVTLECVANARPLIKLSITWRKNGVLVNRGLRD 290

  Fly   563 DIRQRVQPDGSLTIS-PVQKNSDSGVYTCWA--RNKQGHSARRSGEVTVIVPPKLSPFQTNILQL 624
            ..|:       |||| |:.  ||||.|.|.|  |:....|......:.|:..|:........:..
Zfish   291 FGRR-------LTISGPLV--SDSGYYQCEASLRSSSAPSVSAGAYLHVLEHPQFVKEPDRHITA 346

  Fly   625 NMGDRASLTCSVVKGDLPLTINWRKDGRPIDPTQHMSVKQVDQYNSI----LVIENLGSDHTGNY 685
            .|.....:.|. .:|.....|.|.||..||.|.      :..:|..:    |.|..|..|.||.:
Zfish   347 EMEKVVDIPCQ-ARGVPQPDIVWYKDAVPISPV------KTPRYRVLVGGSLQINGLLPDDTGMF 404

  Fly   686 SCVVRNSAAEVE-NSQALLVNVPPRWIVEPVDANVERNRHIMLHCQAQGVPTPSIVWKK-----A 744
            .|..||.|.|:: |:...:.::.|.....|.|:.|.....|:|||:..|.|.|:|.|:|     |
Zfish   405 QCFARNLAGEIQTNTYLAVTSIAPNITAGPSDSAVIDGMSIILHCETSGAPRPAITWQKAERVLA 469

  Fly   745 TGSKSGEYEEVRERPFTKLLGNGSLLL--QHVKEDREGFYLCQANN--GIGTGIGKVI---QLKV 802
            :||       |:...|| ||.:||||:  .|:.:  .|.|.|.|:|  ||......::   :.::
Zfish   470 SGS-------VQLPRFT-LLESGSLLISPSHLLD--AGSYTCMASNSRGIDEASADLVVWARTRI 524

  Fly   803 NSSPYFSSTSRSVMVKKGDTALLQCAVSGDKPINI--VWMRSGKNTLNPSTNYKISVKQEATPDG 865
            .:.|...|      |.||..|.:.|.|:.|..:.:  :|.:.|. .::..::.::.:....|   
Zfish   525 TNPPQDQS------VIKGTKAAMTCGVTHDPSVTVRHIWEKGGA-VIDVKSSPRLRLDSNGT--- 579

  Fly   866 VSAELQIRTVDATDSGPYFCRASNLYGNDQQLVQLQVQEPPLPPSVLEAAMISS--RSVNIKWQP 928
                |.|....:.|.|.|.||.:::.|||.:...|:|::.|..|..|.|.:..|  |::|:.|..
Zfish   580 ----LHISQTWSGDIGTYTCRVTSVGGNDTRNAHLRVRQLPHAPENLIATLSISERRTINLTWAQ 640

  Fly   929 KTLGTGDVTKYIVEFREADHSLPPALFVDQWQQIEVK-DPPHFNAMIENLKPATRYAFRVIAEGS 992
            ...|...:.:||:|..|  ::.|       |..:... :|...:.::..|.||..|.||:.|...
Zfish   641 AFDGNSPLIRYILEVSE--NNAP-------WTVLLANIEPESISVIVGGLIPARSYQFRLCAVND 696

  Fly   993 AGRSAPSQELIVRTEPQR-PAGPPLSLSARPLSSTELLISWVAPLPELRHGDIQGYNVGYKLSSS 1056
            .|:...|:|....:.|:. |:.||.::.|...::..::|.|..|....::|.:|||.:.|.||..
Zfish   697 VGKGQFSRETARVSLPEEPPSAPPQTVIASGRTNQSIMIQWQPPPESHQNGPLQGYIIRYCLSGL 761

  Fly  1057 GNTAY--NFTSVSGDGDGGNGELLLSGLAKFARYTVVVQAFNQVGPGPLSEPTAAQTMEDVPSRP 1119
            .....  |.|    :.|..|  |||..|..:..|.:.|.|:|..|.|..|......|::.||:.|
Zfish   762 PVDCQMKNIT----NPDQTN--LLLEDLIIWTNYEIEVAAYNGAGQGVYSPKVTEWTLQGVPTVP 820

  Fly  1120 PEDVRCAALSSQSLQVSWQPPPIYHTNGLLQGYKLI-FEP------IIDDIQPS-KDEVESRKTT 1176
            |.:|:..|::|.:::.:|..|.....||:.|||||: :||      .:..::|: :|.|.     
Zfish   821 PGNVQAEAVNSTTVRFTWSAPSPQFINGINQGYKLLAWEPGHEEDVTLVTVRPNFQDSVH----- 880

  Fly  1177 ALTMVLTGLRKYTNYSIQVLAHTRMGDGVVSKPLFCHSEEDVPEAPADIKVVSSSSQSLYISWLP 1241
              ...::||:|:|.|...||..|..|||..|......:.||.|.....:........||.:||..
Zfish   881 --VGYISGLKKFTEYFTCVLCFTTPGDGPRSTAQRIRTHEDTPGPVGHLSFTEILDTSLKVSWKD 943

  Fly  1242 PNEPNGVITKYSLYTRVVNGREELNNEK----RSLPSQQAYYEAKGLHPHMEYQFWVTASTRVGE 1302
            |.|.||::|.|.:      ..||.|...    ..||:....|...||.....|...|...|..|:
Zfish   944 PPEKNGILTGYRI------SWEEFNRTNTRVTHYLPNMTQEYRVTGLTALTTYTIQVAGMTNKGQ 1002

  Fly  1303 GK--SSRVSS-----------QITTNRIPARIISF-------GGPVVRPWRSTVTLPCTAVGKPK 1347
            |:  ||.:||           .|..:.|..|.::.       |...:..|  .:......:|: .
Zfish  1003 GQLSSSTISSGVPPEMPGPPTNIAISNISPRSVTLQFKPGYDGKTSISRW--LIEAQIGVIGE-N 1064

  Fly  1348 REWFKSDVALRQGGLHNSQLLDSGDLIISSLQLADGGNYSCQVDNGIGT------DRLTHTLIVQ 1406
            .||    |.:.|  |.|..  |:..|.:..|.......:..:..|.:||      .|...||  |
Zfish  1065 EEW----VMVHQ--LSNEP--DARSLEVQGLNPYTYYRFRMRQVNIVGTSPPSQPSRKIQTL--Q 1119

  Fly  1407 VPP-TAPV-LYVTSATSSSILMHW----KCGFTGNAPITGYTLFYRRAN---GNTDEMQLSRHAS 1462
            .|| .||. :.:.:|:.:|:.:.|    :..:.||..:.||.:.|.|..   |....:...|...
Zfish  1120 APPDIAPANITLRTASETSLWLRWVPLPEWEYNGNPELVGYRVQYSRLGSKVGFLSHIIPDRQER 1184

  Fly  1463 SHELKGLMCGSTYQIHLSAQNKVGTSPTSTILHVRTQGQSPGH-PASTALLAPNSTSLLVRLHSW 1526
            ...::.|...:.|::.:.|.|.:|..|.|..:|.||:...|.. ||:.:..|..|:|:|||   |
Zfish  1185 EFTIEDLEEWTEYEVKVQAFNGIGPGPWSQPVHGRTRESVPSSGPANVSAFATTSSSILVR---W 1246

  Fly  1527 PD------NGCPLLYFVLQYRAVTDDPDAE-----WVLVSNALKPQRRIVINNLQPSTLYQLRME 1580
            .|      ||     .:|.|:.|..:.|||     |.:..|.   ...:.:..|....||::::.
Zfish  1247 GDVPETDRNG-----LILGYKVVYKEKDAESVLHFWTVEGNT---TYSVQLTGLGKYVLYEIQVL 1303

  Fly  1581 AHNVAGISQAEFNFVTLTKDGDPPPPEIMHRG--------------------------------- 1612
            :....|             ||.|..|.|..|.                                 
Zfish  1304 SFTRIG-------------DGMPSSPPIFERTLDDVPGPPVGILFPEVRTSSVRLIWQPPAQPNG 1355

  Fly  1613 ---------RSGQTTVIFANINLLIP--------------------TIAAVSGMFCTIIMIIVCY 1648
                     |...:::..||:::|.|                    |.....|.......::|..
Zfish  1356 IILAYQIAFRRNSSSITSANVDVLNPSARQYTATGLKPESVYVFRLTAQTRKGWGEAAEALVVTT 1420

  Fly  1649 RHMLKNAP---PLAEQSQIQKES--LENRANSEAAQRERYYA-----------TIHKVSMQNNDK 1697
            ....:..|   |:..|.::|..|  |.....|:.....|||.           |:|..|: |::.
Zfish  1421 EKRARPQPTSRPVVPQEEVQARSVLLSWEPGSDGLSPIRYYTIQYRELPDSNWTVHSASV-NHEA 1484

  Fly  1698 IPETSEDISPYATFQL----------------SEAGGNMSQPHHGGPANTLLHSFMYHERALAEG 1746
            .....:.:.|:.::|.                |||...:.......|  |:| |...|.......
Zfish  1485 TSYVIDRLKPFTSYQFRVKATNDIGDSEYSEESEAITTLQDAPDKAP--TIL-SVTPHTTTSVLV 1546

  Fly  1747 CSSPPPAASKN--------RRRHSR---------------------KTEPESEESESDQDQLTSS 1782
            ...|||....|        |.|..|                     .|.|.|..:.| :..||..
Zfish  1547 RWKPPPEEEINGILLGFRVRYRELRYDRLRSFTVRTVNSPAGNWAELTAPYSVRNLS-ESSLTQY 1610

  Fly  1783 RTESSNQHEG-KIKHSI--------------IYHG------------AQSSTSSDLS-----PMS 1815
            ..::.|:|:. :|:.|:              ::.|            .||||::.|.     |..
Zfish  1611 ELDNLNKHKRYEIRLSVYNAVGEGPTSSPQEVFVGEAVPTAAPQNVAIQSSTATQLDVTWDPPPV 1675

  Fly  1816 EQKSLPRRGRSRYHHQQYQFS-TNTTPRHHN------SNKMNN---NTTSNTNTTATNTTATPST 1870
            |.::...:|...|:   ::|. .|.|.|...      |.|:.|   .||...:.:|.|....   
Zfish  1676 EAQNGDIQGYKIYY---WEFQLQNETERLRTLFLPELSVKLKNLTGYTTYMISVSAFNAAGD--- 1734

  Fly  1871 SSNSNKILSPRGGNLKSISSTFKSQDSIQCHIPTLVKSPSISTQQQKQFHKQQLQNSSTNNSQHS 1935
                    .||.                   :||..::...:.......|..:|..:|.|.|...
Zfish  1735 --------GPRS-------------------LPTRGRTQQAAPSAPNFIHFSELTTTSVNMSWGE 1772

  Fly  1936 SSNPN 1940
            ...||
Zfish  1773 PKQPN 1777

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam2NP_001261500.1 Ig 30..128 CDD:472250
Ig strand B 49..53 CDD:409353
Ig strand C 62..66 CDD:409353
Ig strand E 86..90 CDD:409353
Ig strand F 106..111 CDD:409353
Ig strand G 119..123 CDD:409353
V-set 138..229 CDD:462230
Ig 238..327 CDD:472250
Ig strand B 255..259 CDD:409353
Ig strand C 268..272 CDD:409353
Ig strand E 293..297 CDD:409353
Ig strand F 307..312 CDD:409353
Ig strand G 320..323 CDD:409353
Ig 330..418 CDD:472250 24/90 (27%)
Ig strand B 348..352 CDD:409353 0/3 (0%)
Ig strand C 365..369 CDD:409353 0/3 (0%)
Ig strand E 383..387 CDD:409353 0/3 (0%)
Ig strand F 397..402 CDD:409353 2/4 (50%)
Ig strand G 411..414 CDD:409353 1/2 (50%)
IgI_4_Dscam 422..517 CDD:409548 22/105 (21%)
Ig strand A 422..425 CDD:409548 0/2 (0%)
Ig strand A' 431..435 CDD:409548 2/7 (29%)
Ig strand B 438..447 CDD:409548 1/8 (13%)
Ig strand C 452..458 CDD:409548 3/5 (60%)
Ig strand C' 460..463 CDD:409548 1/2 (50%)
Ig strand D 468..476 CDD:409548 1/7 (14%)
Ig strand E 480..489 CDD:409548 1/8 (13%)
Ig strand F 496..504 CDD:409548 3/13 (23%)
Ig strand G 507..517 CDD:409548 0/9 (0%)
IgI_5_Dscam 521..608 CDD:409550 31/97 (32%)
Ig strand A 521..523 CDD:409550 1/1 (100%)
Ig strand A' 528..532 CDD:409550 2/3 (67%)
Ig strand B 535..542 CDD:409550 2/8 (25%)
Ig strand C 549..555 CDD:409550 2/7 (29%)
Ig strand C' 556..558 CDD:409550 1/5 (20%)
Ig strand D 565..569 CDD:409550 1/3 (33%)
Ig strand E 572..578 CDD:409550 4/6 (67%)
Ig strand F 586..594 CDD:409550 4/9 (44%)
Ig strand G 598..608 CDD:409550 1/9 (11%)
Ig 611..704 CDD:472250 24/97 (25%)
Ig strand B 630..634 CDD:409353 0/3 (0%)
Ig strand C 644..648 CDD:409353 1/3 (33%)
Ig strand E 670..674 CDD:409353 1/7 (14%)
Ig strand F 684..689 CDD:409353 1/4 (25%)
Ig strand G 697..700 CDD:409353 1/3 (33%)
IgI_7_Dscam 707..802 CDD:409546 34/106 (32%)
Ig strand A 707..711 CDD:409546 1/3 (33%)
Ig strand A' 716..720 CDD:409546 1/3 (33%)
Ig strand B 723..732 CDD:409546 4/8 (50%)
Ig strand C 738..744 CDD:409546 3/10 (30%)
Ig strand C' 750..753 CDD:409546 0/2 (0%)
Ig strand D 761..764 CDD:409546 1/2 (50%)
Ig strand E 767..773 CDD:409546 4/7 (57%)
Ig strand F 780..788 CDD:409546 4/7 (57%)
Ig strand G 793..802 CDD:409546 0/11 (0%)
Ig 806..892 CDD:472250 19/87 (22%)
Ig strand B 823..827 CDD:409353 1/3 (33%)
Ig strand C 836..840 CDD:409353 0/5 (0%)
Ig strand E 868..872 CDD:409353 1/3 (33%)
Ig strand F 882..887 CDD:409353 2/4 (50%)
FN3 <904..1195 CDD:442628 83/304 (27%)
FN3 906..1006 CDD:238020 26/102 (25%)
fn3 1221..1306 CDD:394996 23/90 (26%)
Ig 1336..1396 CDD:409353 11/59 (19%)
Ig strand B 1336..1340 CDD:409353 0/3 (0%)
Ig strand E 1371..1375 CDD:409353 1/3 (33%)
Ig strand F 1385..1390 CDD:409353 0/4 (0%)
FN3 <1407..>1606 CDD:442628 53/219 (24%)
fn3 1408..1491 CDD:394996 21/91 (23%)
sdk2aXP_073801113.1 None
Blue background indicates that the domain is not in the aligned region.

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