DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dscam2 and sdk1a

DIOPT Version :10

Sequence 1:NP_001261500.1 Gene:Dscam2 / 38788 FlyBaseID:FBgn0265296 Length:2101 Species:Drosophila melanogaster
Sequence 2:XP_009297968.2 Gene:sdk1a / 558391 ZFINID:ZDB-GENE-081104-374 Length:2246 Species:Danio rerio


Alignment Length:1869 Identity:444/1869 - (23%)
Similarity:729/1869 - (39%) Gaps:388/1869 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   189 PTGELLIHN--LQESDESQSFRCRSMHRLTRQVVVSSPTRLRINSHRGIISPSVVEHTAHVQVSQ 251
            |.|.   ||  |:|.:|..|             |.|...|.|.::.|        ..:..:....
Zfish    22 PAGR---HNTALKEEEEEDS-------------VYSGGDRSRKDTAR--------SRSTALLTRV 62

  Fly   252 DEGAVLLCVAQGCPSPEYSWFT----HNGAGPLPVLSGPR---VRLLG-------PILAIEAVTG 302
            |:.|: :|..:...|.....||    .|.:|     :|.|   ||...       .:..:||||.
Zfish    63 DKNAI-MCDLKSASSSSSMIFTRFSGRNFSG-----NGKRKFAVRTWSWWAFFCLQVHVLEAVTQ 121

  Fly   303 EDSGVYKCTAGNVGGEASAELRLTVATPIQVEISPNVLSVHMGGTAEFRCLVT--SNGS-PVGMQ 364
            .|...|                        .:..|....:|:.|.   |.::|  :.|| |:..:
Zfish   122 GDVAPY------------------------FKTEPGPPEIHLEGN---RLVMTCLAEGSWPLEFK 159

  Fly   365 NILWYKDGRQLPSSGRVEDTLVVPRVSRENRGMYQCVVRRPEGDTFQATAELQ---LGDAPPVLL 426
               |..:...: ::...|....:..:.|.|.|:||||||...|...|..||:|   :||      
Zfish   160 ---WMLNNTDI-TAFSPEYKYTISSLQRSNMGVYQCVVRNRMGALLQKKAEIQVAYMGD------ 214

  Fly   427 YSFIE----QTLQPGPAVSLKCSAAG-NPTPQISWTLDGFP-LPSNG-RFMIGQYITVHGDVISH 484
              ||:    :|:..|.|..|...|.. .|.||::|..||:. :|||. ...:...:.|.....|.
Zfish   215 --FIDNDQRKTVTQGRAAILNSPAVSCFPRPQVTWFRDGYKIIPSNRIAITLENQLVVLATAASD 277

  Fly   485 VNISHVMV--EDGGE-------YACIAENRAGRVQHAARLNIYGLPYIRLIP--KVTAVSG-ETL 537
            ....:|..  |..||       |..:|.|:..|..|.:......:..:.:||  ..|.|:| ...
Zfish   278 AGRYYVQAVNEKNGENKTSPSIYLNVAANKKYRGSHDSEAPADPVAPVIVIPPRNTTVVAGISEA 342

  Fly   538 NLKCPVAGYPIEEIH--WERGGRELPDDIRQRVQPDGSLT-----ISPVQKNSDSGVYTCWARNK 595
            .|:|.....|:|::.  |.|.|.|:...:       ||.:     |:|.  ::|.|:|.|.|...
Zfish   343 TLECVANARPVEKLSLVWRRNGVEVASGV-------GSFSRRLTIINPT--STDVGMYVCEALLL 398

  Fly   596 QGHSARRSGEVTVIVPPKLSP-FQTNILQLNMGD---RASLTCSVVKGDLPLTINWRKDGRPIDP 656
            .  |:.:..|....:....:| |.....:..||:   ...:.|......:| .:.|.||..|:..
Zfish   399 D--SSVKPAEARAFLSITEAPYFTAEPRRKMMGEVEKSVDIQCQARGVPMP-KLEWYKDAVPLSK 460

  Fly   657 TQHMSVKQVDQYNSILVIENLGSDHTGNYSCVVRNSAAEVENSQAL-LVNVPPRWIVEPVDANVE 720
            ..:...|.:....  |.:..|.....|.:.|..||||.|.:....| :.::.|.:...|:|..|.
Zfish   461 LNNPRYKIISSMG--LQVRKLQPSDAGIFQCFARNSAGEAQVHTYLDVTSMAPAFTAPPLDITVT 523

  Fly   721 RNRHIMLHCQAQGVPTPSIVWKK-----ATGSKSGEYEEVRERPFTKLLGNGSLLLQHVKEDREG 780
            ........|:..|.|.|:|||::     |:||       |:...|| ||.:|.|.:|.|.....|
Zfish   524 DGAVAAFTCRVSGAPKPAIVWRRDTQILASGS-------VQIPRFT-LLESGGLQIQPVVLQDTG 580

  Fly   781 FYLCQANNGIGTGIGKVIQLKVNSSPYFSSTSRSVMVKKGDTALLQCAVSGDKPINI--VWMRSG 843
            .|.|.|.|..| .|.....|.|.|....||......|.||.||:|:|..:.|..:.:  || :..
Zfish   581 NYTCYAANSEG-AINASASLTVWSRTSISSPPTDRRVIKGTTAILECGATHDPRVGVRYVW-KKD 643

  Fly   844 KNTLNPSTNYKISVKQEATPDGVSAELQIRTVDATDSGPYFCRASNLYGNDQQLVQLQVQEPPLP 908
            :..::.|...:||:::        ..|.|....:.|.|.|.|...:..||:.:..:|:|.|.|..
Zfish   644 EELVSHSRGGRISLQE--------GSLHISQTWSGDIGNYTCDVISEAGNESKEARLEVIELPHS 700

  Fly   909 PSVLEAAMIS--SRSVNIKWQPKTLGTGDVTKYIVEFREADHSLPPALFVDQWQ-QIEVKDPPHF 970
            |..|:|::.:  ||||::.|.....|...:..|:||..|.:         ..|: .:...||...
Zfish   701 PRNLQASLNANDSRSVDLSWMRPFDGNSPLLHYVVELSENN---------SPWRVYLSDVDPSGT 756

  Fly   971 NAMIENLKPATRYAFRVIAEGSAGR---SAPSQELIVRTEPQRPAGPPLSLSARPLSSTELLISW 1032
            .||::.|.||..|.|||.|....||   |..:..|::|.||  |:.||.::.|...::..:::.|
Zfish   757 GAMVKGLTPARSYQFRVCAVNQVGRGQYSTETNRLMLREEP--PSAPPKNIVASGRTNQSIMVQW 819

  Fly  1033 VAPLPELRHGDIQGYNVGYKLSSSGNTAYNFTSVSGDGDGGNGEL---LLSGLAKFARYTVVVQA 1094
            ..|.....:|.::||.:.|:|:.... .|...::|      :.|:   |::.|..:.:|.:.|.|
Zfish   820 QPPPEPQLNGVLRGYVLRYRLAGLPG-EYQQKNIS------SPEINYCLITELIIWTQYEIQVAA 877

  Fly  1095 FNQVGPGPLSEPTAAQTMEDVPSRPPEDVRCAALSSQSLQVSWQPPPIYHTNGLLQGYKLIFEPI 1159
            :...|.|..|:|....|::.||:.||:.|...|::|.:::.||.|||....||:.|||||:..| 
Zfish   878 YTGAGLGVFSQPVTEYTLQGVPTAPPQGVEAKAVNSTTIEFSWNPPPQQFINGINQGYKLMAWP- 941

  Fly  1160 IDDIQPSKDEVESRKTTALTMV-----------LTGLRKYTNYSIQVLAHTRMGDGVVSKPLFCH 1213
                :.|.:||     ..:|:.           ::||||::.|...||..|..|:|..|.|....
Zfish   942 ----ERSPEEV-----IVVTITPDYHGTRHLGYISGLRKFSWYLTSVLCFTTPGNGPRSAPKLVQ 997

  Fly  1214 SEEDVPEAPADIKVVSSSSQSLYISWLPPNEPNGVITKYSLYTRVVNGREELNNEK---RSLPSQ 1275
            :.||:|.....:........||.:||..|.:.||:||.|     :|:...:.||:.   |:|.:.
Zfish   998 TFEDIPGPVGRLSFTEILDTSLKVSWEEPVDKNGIITGY-----LVSWEVQGNNQSRVARNLANT 1057

  Fly  1276 QAYYEAKGLHPHMEYQFWVTASTRVGEG--KSSRVSSQI-------TTNRIPARIIS-------- 1323
            ...|:..||.....|...|.|.|..|.|  .||.:||.:       .:|.:.::|.|        
Zfish  1058 TLDYKVTGLTSLTTYTLEVAAMTEAGVGTVTSSTISSGVPPELPGPPSNLVISKISSRSATLKFR 1122

  Fly  1324 ---FGGPVVRPWRSTVTLPCTAVGKPKREWFKSDVALRQGGLHNSQLLDSGDLIISSLQLADGGN 1385
               .|...:..|  .|.....::|:.: ||   .|...:.....:|:|:     :.:|.......
Zfish  1123 AGDDGKTAISKW--IVEGQVGSIGEDE-EW---KVLYEKENDPEAQMLE-----VPNLTPFTHYR 1176

  Fly  1386 YSCQVDNGIG------TDRLTHTLIVQVPP-TAP-VLYVTSATSSSILMHW----KCGFTGNAPI 1438
            :..:..|.:|      ..|:..||  |.|| .|| .:.|.:|:.:|:.:.|    :..:.||...
Zfish  1177 FRMRQVNIVGPSAVSVPSRVIQTL--QAPPDVAPSSVTVRTASETSLWLRWVPLPESEYNGNPES 1239

  Fly  1439 TGYTLFYRRAN--GNTDEMQLS-RHASSHELKGLMCGSTYQIHLSAQNKVGTSPTSTILHVRTQG 1500
            .||.:...||:  |......|: |......|:||...:.||:.:.|.|.:|..|.|..:..||:.
Zfish  1240 VGYRVRVMRADLRGEASTRLLNDRLEREITLEGLEEWTEYQLQIQAFNSIGPGPWSESVKGRTRE 1304

  Fly  1501 QSP-GHPASTALLAPNSTSLLVRLHSWPD---NGCPLLYFVLQYRAVTDDPDAEWVLVSNALKPQ 1561
            ..| |.|.:....|.:|:.:||.....|:   ||..|.|.|| ::....|.:|:..:|...|  .
Zfish  1305 SVPSGAPENVTAEAMSSSRILVTWGPVPEHEQNGNILGYKVL-FKEKDSDSEAQVNVVKGNL--T 1366

  Fly  1562 RRIVINNLQPSTLYQLRMEAHNVAGISQAEFNFVTL--TKDGDPPPP------------------ 1606
            :.:::.||:....|::::.|....|..|.. |...|  |||..|.||                  
Zfish  1367 QSVLLRNLRKYVQYEIQVLAFTRIGDGQLS-NPPVLERTKDDVPGPPMRLVFPEVRLTEVRVVWQ 1430

  Fly  1607 ------------EIMHRGRSGQTTVIFANINL-----------LIPTIAAV--------SGMFCT 1640
                        ::.:|..||.... |..|.:           |.|..|.:        .|....
Zfish  1431 PPVDPNGIIMGYQVAYRLDSGDPNQ-FITIEVGPDTRQFTASSLTPESAYIFRISAKTEQGWGSP 1494

  Fly  1641 IIMIIVCYRHMLKNAPPLAEQSQIQKESLENR-------ANSEAAQRERYYATIHKVSMQNNDKI 1698
            ...:::......:..||  .|.::.::.:::|       ...:.:...||: |:....:.:.:.|
Zfish  1495 AQAVVITTEIRERPQPP--RQLRVPQDHVQSRKLLLNWVPGGDGSSPVRYF-TLQTQELPSGEWI 1556

  Fly  1699 PETSEDISPYATFQLSEAGGNMSQPHHGGPANTLLHSFMYHERALAEGCSSPPPAASKNRRRHSR 1763
            |.:|.....|:::::...                                  .|..|...|..:.
Zfish  1557 PHSSAISHNYSSWEVDRL----------------------------------KPFTSYKLRMMAT 1587

  Fly  1764 KTEPESEESESDQDQLTSSRTESSNQHEGKIKHSIIYHGAQSSTSSDLSPMSEQKSLPRRG---- 1824
            ....:|:.|: :.|.:|   |......|..:..|:    ..|:|:|.|......|.....|    
Zfish  1588 NDVGDSKYSQ-ETDAIT---TLQDVPDEAPMIQSV----KPSTTTSVLVQWQTPKEESVNGVLVG 1644

  Fly  1825 -RSRYHHQQYQFSTNTTPRHHNSNKMNNNTTSNTNTTATNTTATPSTSS 1872
             |..|...||    ::||:  :|.:..|::...|..||.:|..|.|..|
Zfish  1645 YRLYYRELQY----DSTPQ--DSKRPVNSSQLRTELTAKSTVKTVSNPS 1687

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam2NP_001261500.1 Ig 30..128 CDD:472250
Ig strand B 49..53 CDD:409353
Ig strand C 62..66 CDD:409353
Ig strand E 86..90 CDD:409353
Ig strand F 106..111 CDD:409353
Ig strand G 119..123 CDD:409353
V-set 138..229 CDD:462230 11/41 (27%)
Ig 238..327 CDD:472250 18/102 (18%)
Ig strand B 255..259 CDD:409353 1/3 (33%)
Ig strand C 268..272 CDD:409353 0/3 (0%)
Ig strand E 293..297 CDD:409353 0/3 (0%)
Ig strand F 307..312 CDD:409353 1/4 (25%)
Ig strand G 320..323 CDD:409353 0/2 (0%)
Ig 330..418 CDD:472250 24/93 (26%)
Ig strand B 348..352 CDD:409353 0/3 (0%)
Ig strand C 365..369 CDD:409353 0/3 (0%)
Ig strand E 383..387 CDD:409353 0/3 (0%)
Ig strand F 397..402 CDD:409353 3/4 (75%)
Ig strand G 411..414 CDD:409353 1/2 (50%)
IgI_4_Dscam 422..517 CDD:409548 27/110 (25%)
Ig strand A 422..425 CDD:409548 0/2 (0%)
Ig strand A' 431..435 CDD:409548 1/7 (14%)
Ig strand B 438..447 CDD:409548 2/8 (25%)
Ig strand C 452..458 CDD:409548 3/5 (60%)
Ig strand C' 460..463 CDD:409548 1/3 (33%)
Ig strand D 468..476 CDD:409548 0/7 (0%)
Ig strand E 480..489 CDD:409548 1/8 (13%)
Ig strand F 496..504 CDD:409548 4/14 (29%)
Ig strand G 507..517 CDD:409548 2/9 (22%)
IgI_5_Dscam 521..608 CDD:409550 24/96 (25%)
Ig strand A 521..523 CDD:409550 0/1 (0%)
Ig strand A' 528..532 CDD:409550 1/3 (33%)
Ig strand B 535..542 CDD:409550 1/6 (17%)
Ig strand C 549..555 CDD:409550 2/7 (29%)
Ig strand C' 556..558 CDD:409550 0/1 (0%)
Ig strand D 565..569 CDD:409550 0/3 (0%)
Ig strand E 572..578 CDD:409550 3/10 (30%)
Ig strand F 586..594 CDD:409550 4/7 (57%)
Ig strand G 598..608 CDD:409550 2/9 (22%)
Ig 611..704 CDD:472250 21/97 (22%)
Ig strand B 630..634 CDD:409353 0/3 (0%)
Ig strand C 644..648 CDD:409353 0/3 (0%)
Ig strand E 670..674 CDD:409353 1/3 (33%)
Ig strand F 684..689 CDD:409353 1/4 (25%)
Ig strand G 697..700 CDD:409353 0/2 (0%)
IgI_7_Dscam 707..802 CDD:409546 31/99 (31%)
Ig strand A 707..711 CDD:409546 1/3 (33%)
Ig strand A' 716..720 CDD:409546 1/3 (33%)
Ig strand B 723..732 CDD:409546 1/8 (13%)
Ig strand C 738..744 CDD:409546 3/10 (30%)
Ig strand C' 750..753 CDD:409546 0/2 (0%)
Ig strand D 761..764 CDD:409546 1/2 (50%)
Ig strand E 767..773 CDD:409546 2/5 (40%)
Ig strand F 780..788 CDD:409546 4/7 (57%)
Ig strand G 793..802 CDD:409546 2/8 (25%)
Ig 806..892 CDD:472250 21/87 (24%)
Ig strand B 823..827 CDD:409353 2/3 (67%)
Ig strand C 836..840 CDD:409353 1/5 (20%)
Ig strand E 868..872 CDD:409353 1/3 (33%)
Ig strand F 882..887 CDD:409353 2/4 (50%)
FN3 <904..1195 CDD:442628 88/310 (28%)
FN3 906..1006 CDD:238020 31/105 (30%)
fn3 1221..1306 CDD:394996 24/89 (27%)
Ig 1336..1396 CDD:409353 10/65 (15%)
Ig strand B 1336..1340 CDD:409353 1/3 (33%)
Ig strand E 1371..1375 CDD:409353 0/3 (0%)
Ig strand F 1385..1390 CDD:409353 0/4 (0%)
FN3 <1407..>1606 CDD:442628 59/213 (28%)
fn3 1408..1491 CDD:394996 26/91 (29%)
sdk1aXP_009297968.2 None
Blue background indicates that the domain is not in the aligned region.

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