DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dscam2 and il1rapl1b

DIOPT Version :9

Sequence 1:NP_001261500.1 Gene:Dscam2 / 38788 FlyBaseID:FBgn0265296 Length:2101 Species:Drosophila melanogaster
Sequence 2:NP_001136054.1 Gene:il1rapl1b / 557801 ZFINID:ZDB-GENE-090109-2 Length:700 Species:Danio rerio


Alignment Length:753 Identity:156/753 - (20%)
Similarity:265/753 - (35%) Gaps:219/753 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   626 MGDRASLTCSVVKG----------DLPLTINWRKDG------RPIDPTQHMSVKQVDQYNSILVI 674
            :|:...:.|::..|          ...|::.|.:..      .||......::|:.|    .|..
Zfish    45 LGEPVRIKCALFYGYIRANYTHAQSAGLSLMWYRSATHTDHEEPITLDGTRTLKEED----ALWF 105

  Fly   675 ENLGSDHTGNYSCVVRNSA---------AEVENSQALLVNVPPRWIVEPVDANVERNRHIMLHCQ 730
            .......:|:||||:|||:         ...|||..|..|...|.:.:   |.:.:::.|:....
Zfish   106 RPAQLQDSGHYSCVLRNSSYCMKVSMALTVAENSSGLCYNSKMRRLEK---AELSKSKDILCPDI 167

  Fly   731 AQGVPT---PSIVWKKATGSKSGEYEEVRERPF-TKLLGNGSLL-LQHVKEDREGFYLCQANNGI 790
            ....|.   |.:.|          |:|.|.:.: :.::....|| ::.|:||..|.|.|:...|.
Zfish   168 QDYTPAGSEPHVTW----------YKECRPKQWRSSIIRTADLLSIRDVREDDIGNYTCEIQFGR 222

  Fly   791 GTGIGKVIQLKVNSSPYFSSTSR---------SVM-VKKGDTALLQC----AVSGDKPINIVWMR 841
            .. :.:..:|.| ::|......:         ||| ::.|....|.|    ..|||....|.||:
Zfish   223 FL-VRRTTELTV-TAPLTDKPPKILQPPEHKLSVMELQLGGPVNLTCRAFFGYSGDVSPLIYWMK 285

  Fly   842 SGK------NTLNPSTNYKISVKQEATPDGVSAELQIRTVDATDSGPYFCRASNLYGNDQQLVQL 900
            ..|      .|....:..|: |::......||..|.|.::...|.|.|.|...|.:|....::||
Zfish   286 GEKFIEDLDETRIRESEIKM-VREHLGEQEVSVSLTIDSLQEEDLGNYSCYVENGHGRRHAIIQL 349

  Fly   901 QVQE--------PPLPPSVLEAAMISS-----RSVNIKWQPKTLGTGDVT------KYIVEFREA 946
            ..:|        ..|...:|....:.|     |...:.:.....|:.||.      ...|.:.:.
Zfish   350 SRRELMYTVELAGGLGAILLMLIFLVSLYKCYRIELMLFYRNHFGSEDVDGENKDYDAYVSYTKV 414

  Fly   947 DHSLPPALFVDQWQQIEVKDPPHFNA-----MIENLKPATRYAFRVIAEGSAGRSAPSQELIVRT 1006
            |        .|||.| |.::..||..     |:|.     .|.:::.        .|.::||   
Zfish   415 D--------PDQWSQ-ETREEEHFALEILPDMLEK-----HYGYKLF--------IPDRDLI--- 454

  Fly  1007 EPQRPAGPPLSLSARPLSSTELLISWVAPLPELRHGDIQGYNVGYKLSSSGNTAYNFTSVSGD-- 1069
                |.|..:...||.:..::.||..:.|...:|    :|::: ::|    .|......|||:  
Zfish   455 ----PTGTYIEDVARCVDQSKRLIIVMTPNYVVR----RGWSI-FEL----ETRLRNMLVSGEIK 506

  Fly  1070 ------GDGGNGELLLSGLAKF-----ARYTV-VVQAFNQVGPGPLSEPTA---AQTMEDVPSRP 1119
                  .|       |.|:..:     .::|: ::......|||. |:|.:   .|...::|.|.
Zfish   507 VILIECSD-------LRGIMNYQEVEALKHTIKLLTVIRWPGPGS-SKPNSRFWKQLQYEMPFRR 563

  Fly  1120 PEDVRCAALS-SQSLQVSWQPPPIYHTNGLLQGYKLIFEPIIDDIQPSKDEVESRKTTALTMVLT 1183
            ||    ..|| .|.|..|.|.|     .|.||....:             .:.|..:||:.....
Zfish   564 PE----PKLSHEQVLDASEQGP-----FGELQTVSAL-------------SMVSATSTAMATAHP 606

  Fly  1184 GLRK--YTNYSIQVLAHTRMGDGVVSKPLFCHSEEDVPEAPADIKVVSSSSQSLY----ISWL-- 1240
            .||.  :..|:.|:.          .|..:...|.|:|.:.....:.:..||..|    :|.|  
Zfish   607 DLRSGFHNTYNTQLR----------QKHYYRGYEYDIPSSGTLPPLATMGSQHTYCNIPMSLLNG 661

  Fly  1241 --PPNEPNGVITKYSLYTRVVNGREELNNEKRSLPSQQ 1276
              ||.:|                   .:.:::||..||
Zfish   662 QRPPGQP-------------------AHGQQQSLEEQQ 680

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam2NP_001261500.1 Ig 51..127 CDD:299845
Ig 138..>203 CDD:299845
I-set 238..327 CDD:254352
Ig 247..327 CDD:299845
I-set 332..418 CDD:254352
IGc2 344..407 CDD:197706
IG_like 432..517 CDD:214653
IGc2 436..507 CDD:197706
I-set 521..610 CDD:254352
IGc2 533..597 CDD:197706
Ig 630..699 CDD:143165 18/93 (19%)
IG_like 714..802 CDD:214653 18/92 (20%)
Ig 725..802 CDD:299845 17/81 (21%)
Ig 823..894 CDD:143165 22/80 (28%)
FN3 906..1006 CDD:238020 22/115 (19%)
FN3 1013..1111 CDD:238020 22/114 (19%)
FN3 1119..1209 CDD:238020 19/92 (21%)
FN3 1219..1313 CDD:238020 13/66 (20%)
Ig 1336..1402 CDD:143165
FN3 1409..1498 CDD:238020
FN3 1515..1588 CDD:238020
il1rapl1bNP_001136054.1 PHA02785 7..334 CDD:165149 67/308 (22%)
Ig 32..135 CDD:299845 18/93 (19%)
Ig 148..234 CDD:299845 20/100 (20%)
Ig 263..348 CDD:143165 22/85 (26%)
TIR 405..559 CDD:279864 39/199 (20%)
Required for synaptic vesicle accumulation during synaptogenesis 564..700 35/168 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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