DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dscam2 and sdk1b

DIOPT Version :10

Sequence 1:NP_001261500.1 Gene:Dscam2 / 38788 FlyBaseID:FBgn0265296 Length:2101 Species:Drosophila melanogaster
Sequence 2:NP_001430356.1 Gene:sdk1b / 555553 ZFINID:ZDB-GENE-090311-17 Length:2292 Species:Danio rerio


Alignment Length:2025 Identity:465/2025 - (22%)
Similarity:748/2025 - (36%) Gaps:521/2025 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   209 CRSMHRLTR----------QVVVSSPTRLRINSHRGIISPSVVEHTAHVQVSQDEGAVLLCVAQG 263
            |..:.:..|          ..|::||. ..:|.:|.:   :.|:.:||..:|.       ..:..
Zfish    51 CEGLQKAVRHESKAAGKVADSVLNSPA-CGMNENRLV---NAVKQSAHFPLSS-------LTSTS 104

  Fly   264 CPSPEYSWFTHNGAGPLPVLSGPRVRLLGPILAI--------EAVTG------------------ 302
            ..|.::|:   ||        |......|.:..|        :|:||                  
Zfish   105 AASKDFSF---NG--------GQSTLTKGKVKGIINRQGNTAKAMTGKARCGMWAWIFALVFLWN 158

  Fly   303 ------EDSGVY-KCTAGNVGGEASAELRLTVATPIQVEISPNVLSVHMGGTAEFRCLVTSNGS- 359
                  :|:..| |..||  |.:...|                      |......||  :.|| 
Zfish   159 THMLRAQDTAPYFKTEAG--GAQTHLE----------------------GNRLVLTCL--AEGSW 197

  Fly   360 PVGMQNILWYKDGRQLPSSGRVEDTLVVPRVSRENRGMYQCVVRRPEGDTFQATAELQLGDAPPV 424
            |:..:   |.::...: :....|....:..:.||:.|:|||.||...|...|..|::::     .
Zfish   198 PLEFK---WMRNSTDI-TEYTPEYRYTIVSLKREDAGVYQCAVRNRMGALIQTRADVRV-----A 253

  Fly   425 LLYSFIE----QTLQPGPAVSLKCSAAGN-PTPQISWTLDGFPLPSNGRFMI------------- 471
            .:.:|.|    :|:..|.|..|...|..: |.||::|..||..:..|.|..|             
Zfish   254 YMDNFAELEQRKTVSQGRAAVLNPPAVTSFPRPQVTWFRDGVKIIPNHRVAITLDNQLVVLSTAM 318

  Fly   472 ---GQYITVHGDVISHVNISHVMVEDGGE-------YACIAENRAGRVQHAARLNIYGL--PYIR 524
               |:|      .:..||      |..||       |..||.|:..|...|..:....|  |.|.
Zfish   319 ADAGRY------YVQAVN------ERNGENKTSPSIYLSIAINKRNRGSLADVIAPAELVAPVIV 371

  Fly   525 LIPKVTA--VSGETLNLKCPVAGYPIE--EIHWERGGRELP---DDIRQRVQPDGSLTIS-PVQK 581
            :.||.|:  |......|:|......::  ::.|:|.|..|.   |...:|      |.|| |.  
Zfish   372 IAPKNTSVVVGASEATLECVANARSLDRLQVFWKRNGVRLTAGVDSFGRR------LVISNPT-- 428

  Fly   582 NSDSGVYTCWA--RNKQGHSARRSGEVTVIVPPKLSPFQTNILQLNMGDRASLTCSVVKGDLPLT 644
            ::|.|:|.|.|  ||....|......::|:..|..:......:.:.:.....|.|. .||.....
Zfish   429 SADGGLYVCEATLRNSSQKSTEAKAYLSVLESPHFTSKPKRYMIVEVEKNVELQCH-AKGVPTPK 492

  Fly   645 INWRKDGRPIDPTQHMSVKQVDQYNSILVIENLGSDHTGNYSCVVRNSAAEVE-NSQALLVNVPP 708
            :.|.||..|:. |.:.|..::...:.:|.:..:..|..|.:.|...|:|.|:: ::..::.::.|
Zfish   493 LEWFKDAIPLS-TLNNSRYKLTTSSMVLQVRRIQPDDAGIFQCFAENTAGEIQAHTNLVITSMSP 556

  Fly   709 RWIVEPVDANVERNRHIMLHCQAQGVPTPSIVWKKATGSK---SGEYEEVRERPFTKLLGNGSLL 770
            .:...|.|..|......:..|...|.|.|:|||:|  ||:   ||..:..|   || ||.:|.|.
Zfish   557 LFTTPPSDITVTDGTSAVFTCDTSGAPKPAIVWRK--GSQVLASGSVQTPR---FT-LLESGGLQ 615

  Fly   771 LQHVKEDREGFYLCQANNGIGTGIGKVIQLKVNSSPYFSSTSRSVMVKKGDTALLQCAVSGDKPI 835
            :..:.....|.|.|.|:|..|. :...:.|.|.|..:.|:......|.||.||:|.||.:.|..:
Zfish   616 ILPIMPSDAGNYTCLASNTEGL-VNATVALTVLSRTFISTPPEDQRVIKGTTAVLHCAATHDPRV 679

  Fly   836 NI--VWMRSGKNTLNPSTNYKISVKQEATPDGVSAELQIRTVDATDSGPYFCRASNLYGNDQQLV 898
            .:  .| :.|...|:.||..::|:|:        ..|||....:.|.|.|.||..:..|||.:..
Zfish   680 TVRYSW-KKGTKPLSVSTGGRVSMKE--------GSLQISQTWSGDIGDYTCRVISPAGNDSKSA 735

  Fly   899 QLQVQEPPLPPSVLEAAM--ISSRSVNIKWQPKTLGTGDVTKYIVEFREADHSLPPALFVDQWQQ 961
            :|:|.|.|..|..|:.|:  ..||:|.:.|.....|...:..||:||.|  ::.|..:::|.   
Zfish   736 RLEVIELPHSPRNLQVALNETDSRTVLLSWVRPFDGNSPLLHYIIEFSE--NNSPWKVYMDD--- 795

  Fly   962 IEVKDPPHFNAMIENLKPATRYAFRVIAEGSAGR---SAPSQELIVRTEPQRPAGPPLSLSARPL 1023
               ..|...:.::..|.||..|.|||.|....||   ||.:..|::|.||  |:.||.::.|...
Zfish   796 ---VSPTLASLLVIGLTPARTYQFRVCAVNQVGRGQYSAETNRLMLREEP--PSAPPKNIVASGR 855

  Fly  1024 SSTELLISWVAPLPELRHGDIQGYNVGYKLS---------SSGNTAYNFTSVSGDGDGGNGELLL 1079
            ::..:::.|..|.....:|.::||.:.|:|:         :..:...|:..:        |||::
Zfish   856 TNQSIMVQWQPPPEPQLNGVLRGYVLRYRLAGLPGEFQLKNITSAEINYCLI--------GELII 912

  Fly  1080 SGLAKFARYTVVVQAFNQVGPGPLSEPTAAQTMEDVPSRPPEDVRCAALSSQSLQVSWQPPPIYH 1144
                 :.:|.:.|.|:...|.|..|:.....|::.||:.||:||...||:|.:::.:|.|||...
Zfish   913 -----WTQYEIQVAAYTGAGLGVYSQSATEYTLQGVPTAPPQDVEAVALNSTTIKFTWTPPPQQF 972

  Fly  1145 TNGLLQGYKLIFEPIIDDIQPSKDEVESRKTTALTMV--------------LTGLRKYTNYSIQV 1195
            .||:.|||||:..|             ......:|||              ::.|||:|.|...|
Zfish   973 INGINQGYKLLVWP-------------EHCPDCITMVTIAPEFHGSRHYGYVSNLRKFTWYETAV 1024

  Fly  1196 LAHTRMGDGVVSKPLFCHSEEDVPEAPADIKVVSSSSQSLYISWLPPNEPNGVITKYSLYTRVVN 1260
            |..|..|||..|......:..|.|.....:........||.|||..|.:.||:||.|     |::
Zfish  1025 LCFTTPGDGPASTSQLIQTHVDKPGPVTQLSFTEILDTSLRISWQEPEDKNGIITGY-----VLS 1084

  Fly  1261 GREELNNE---KRSLPSQQAYYEAKGLHPHMEYQFWVTASTRVGEGKSSRVSSQITTN------R 1316
            .:|...||   .::|.:....|:..||.....|...|.|.|:.|.|.|:  ||.|:|.      .
Zfish  1085 WQEAGQNETLVSQTLSNSTLAYKVTGLTSLTTYALQVAAVTQAGVGAST--SSTISTGLPPELPG 1147

  Fly  1317 IPARII----------------SFGGPVVRPWRSTVTLPCTAVGKPKR--EWFKSDVALRQGGLH 1363
            .|:.::                |.|...:..|  .|......||:.::  ||   .|...:....
Zfish  1148 APSNLVISNISPRSVTIQFSPGSDGKTEISKW--IVEGQVVTVGEEEKEAEW---KVLYERDSPP 1207

  Fly  1364 NSQLLDSGDLI--------ISSLQLADGGNYSCQVDNGIGTDRLTHTLIVQVPPTAPV-LYVTSA 1419
            .|..|:..:||        :..:.:.....:|       .:.||..|| ...|..||. |.|.||
Zfish  1208 ASDTLEIPNLIPFTQYRFRMKQVNIVGSSPFS-------ESSRLMQTL-QSSPDVAPTELVVFSA 1264

  Fly  1420 TSSSILMHW----KCGFTGNAPITGYTLFYRRANG-NTDEMQLSRHASSHE--LKGLMCGSTYQI 1477
            :.:|:.:.|    :..:.||....||.:..:||:| ....|:......|.|  ::||...:.|::
Zfish  1265 SETSLRIRWEPLPEAAYNGNPESVGYRVRAQRADGFGQPRMETVSDRLSCEVTVEGLEEWTDYEL 1329

  Fly  1478 HLSAQNKVGTSPTSTILHVRTQGQSP-GHPASTALLAPNSTSLLVRLHSWPD---NGCPLLYFVL 1538
            .:.|.|.:|..|.|:.:..:|:...| |.|.:.:..|.:|||:||...|.|:   ||..|.|.||
Zfish  1330 SIQAFNSIGPGPWSSHVLGKTKESVPSGAPENVSAEAMSSTSVLVTWGSVPEHQKNGHILGYKVL 1394

  Fly  1539 QYRAVTDDPDAEWVLVSNALKPQRRIVINNLQPSTLYQLRMEAHNVAGIS------QAEFNFVTL 1597
             ||....|...:..||:.  .....:::.||...|:|::::.|....|..      .||     .
Zfish  1395 -YREKDSDRAPQAHLVNG--NQTHMLLLRNLSKFTVYEIQVLAFTRVGDGPPSLPPTAE-----R 1451

  Fly  1598 TKDGDPPPPEIMHRGRSGQTTVIFANINLLIPTIAAVSGMFCTIIMIIVCYRHMLKNAPPLAEQS 1662
            |||..|.||                 :.|:.|.:...|        :.|.::      ||.....
Zfish  1452 TKDDVPGPP-----------------VRLMFPEVRLSS--------VRVVWQ------PPSEPNG 1485

  Fly  1663 QIQKESLENRANSEAAQRERYYATIHKVSMQNNDKIPETSEDISPYATFQLSEAGGNMSQPHHGG 1727
            .|....:..|.                              ||:....|...|.|.|..|....|
Zfish  1486 IIMGYQISYRL------------------------------DINDPNKFTTVEVGSNARQFTVTG 1520

  Fly  1728 PANTLLHSFMYHERALAEGCSSPPPAASKNRRRHSRKTEPESEESESDQDQLTSSRTESSNQHEG 1792
            ......:.|....|.| :|......|......:..|...|.         :||..:       :|
Zfish  1521 LMPESAYVFQITARTL-QGWGPADEAIVITTEKRERPQAPR---------RLTVPQ-------KG 1568

  Fly  1793 KIKHSIIYHGAQSSTSSDLSPMSEQKSLPRRGRSRYHHQQ--------YQFSTNTTPRHHNS--- 1846
            ...:.:..|.......|  ||:            ||...|        ::..|::.| |:||   
Zfish  1569 VESYKLRLHWMAGGDGS--SPV------------RYFTLQTLELPDGDWKTHTSSIP-HNNSSWE 1618

  Fly  1847 -NKMNNNTTSNTNTTATN--------------TT-------------ATPSTSSN---------- 1873
             :::...|:......|||              ||             ..|||:::          
Zfish  1619 VDRLKPYTSYKFRMMATNDVGDSAFSKETEPVTTLQDVPGEAPVILLVKPSTTTSVIVQWQPPAE 1683

  Fly  1874 --SNKIL---------SPRGGNLKSISSTFKSQDSIQCHIPT---LVKSPSISTQQQKQFHK--- 1921
              .|.||         .|...|.|.:.||.:|..|::....:   .|.|||::..:..|..|   
Zfish  1684 GTVNGILVGYRVYYRELPSESNPKVVQSTNQSTISLEFRAKSTFKTVSSPSLTEFELTQLSKYRR 1748

  Fly  1922 -------------------------QQLQNSSTNNSQHSSSNPNSSSLKQQQPLLITP------- 1954
                                     :...:.:..|.|..|.:.|...::.|.|.:.|.       
Zfish  1749 YAIVMTAFNVVGESPSSAPVEVFVGEAAPSVAPQNIQVKSVSSNQLDVEWQPPPVETQNGNIQGY 1813

  Fly  1955 KLHQLEANGQ 1964
            |:|..|.:.|
Zfish  1814 KIHYWEKDRQ 1823

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam2NP_001261500.1 Ig 30..128 CDD:472250
Ig strand B 49..53 CDD:409353
Ig strand C 62..66 CDD:409353
Ig strand E 86..90 CDD:409353
Ig strand F 106..111 CDD:409353
Ig strand G 119..123 CDD:409353
V-set 138..229 CDD:462230 5/29 (17%)
Ig 238..327 CDD:472250 21/121 (17%)
Ig strand B 255..259 CDD:409353 0/3 (0%)
Ig strand C 268..272 CDD:409353 1/3 (33%)
Ig strand E 293..297 CDD:409353 0/3 (0%)
Ig strand F 307..312 CDD:409353 2/5 (40%)
Ig strand G 320..323 CDD:409353 0/2 (0%)
Ig 330..418 CDD:472250 19/88 (22%)
Ig strand B 348..352 CDD:409353 0/3 (0%)
Ig strand C 365..369 CDD:409353 0/3 (0%)
Ig strand E 383..387 CDD:409353 0/3 (0%)
Ig strand F 397..402 CDD:409353 3/4 (75%)
Ig strand G 411..414 CDD:409353 1/2 (50%)
IgI_4_Dscam 422..517 CDD:409548 29/122 (24%)
Ig strand A 422..425 CDD:409548 0/2 (0%)
Ig strand A' 431..435 CDD:409548 2/7 (29%)
Ig strand B 438..447 CDD:409548 2/8 (25%)
Ig strand C 452..458 CDD:409548 3/5 (60%)
Ig strand C' 460..463 CDD:409548 1/2 (50%)
Ig strand D 468..476 CDD:409548 4/23 (17%)
Ig strand E 480..489 CDD:409548 2/8 (25%)
Ig strand F 496..504 CDD:409548 5/14 (36%)
Ig strand G 507..517 CDD:409548 2/9 (22%)
IgI_5_Dscam 521..608 CDD:409550 26/96 (27%)
Ig strand A 521..523 CDD:409550 1/1 (100%)
Ig strand A' 528..532 CDD:409550 2/5 (40%)
Ig strand B 535..542 CDD:409550 1/6 (17%)
Ig strand C 549..555 CDD:409550 1/7 (14%)
Ig strand C' 556..558 CDD:409550 0/1 (0%)
Ig strand D 565..569 CDD:409550 1/3 (33%)
Ig strand E 572..578 CDD:409550 3/6 (50%)
Ig strand F 586..594 CDD:409550 4/9 (44%)
Ig strand G 598..608 CDD:409550 1/9 (11%)
Ig 611..704 CDD:472250 18/93 (19%)
Ig strand B 630..634 CDD:409353 1/3 (33%)
Ig strand C 644..648 CDD:409353 0/3 (0%)
Ig strand E 670..674 CDD:409353 1/3 (33%)
Ig strand F 684..689 CDD:409353 1/4 (25%)
Ig strand G 697..700 CDD:409353 0/3 (0%)
IgI_7_Dscam 707..802 CDD:409546 30/97 (31%)
Ig strand A 707..711 CDD:409546 1/3 (33%)
Ig strand A' 716..720 CDD:409546 1/3 (33%)
Ig strand B 723..732 CDD:409546 1/8 (13%)
Ig strand C 738..744 CDD:409546 3/5 (60%)
Ig strand C' 750..753 CDD:409546 1/2 (50%)
Ig strand D 761..764 CDD:409546 1/2 (50%)
Ig strand E 767..773 CDD:409546 2/5 (40%)
Ig strand F 780..788 CDD:409546 4/7 (57%)
Ig strand G 793..802 CDD:409546 1/8 (13%)
Ig 806..892 CDD:472250 25/87 (29%)
Ig strand B 823..827 CDD:409353 2/3 (67%)
Ig strand C 836..840 CDD:409353 0/5 (0%)
Ig strand E 868..872 CDD:409353 1/3 (33%)
Ig strand F 882..887 CDD:409353 2/4 (50%)
FN3 <904..1195 CDD:442628 85/318 (27%)
FN3 906..1006 CDD:238020 30/104 (29%)
fn3 1221..1306 CDD:394996 25/87 (29%)
Ig 1336..1396 CDD:409353 11/69 (16%)
Ig strand B 1336..1340 CDD:409353 1/3 (33%)
Ig strand E 1371..1375 CDD:409353 2/11 (18%)
Ig strand F 1385..1390 CDD:409353 1/4 (25%)
FN3 <1407..>1606 CDD:442628 62/216 (29%)
fn3 1408..1491 CDD:394996 26/90 (29%)
sdk1bNP_001430356.1 None
Blue background indicates that the domain is not in the aligned region.

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