DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dscam2 and ptprq

DIOPT Version :10

Sequence 1:NP_001261500.1 Gene:Dscam2 / 38788 FlyBaseID:FBgn0265296 Length:2101 Species:Drosophila melanogaster
Sequence 2:XP_073786317.1 Gene:ptprq / 555426 ZFINID:ZDB-GENE-050419-183 Length:3458 Species:Danio rerio


Alignment Length:2446 Identity:472/2446 - (19%)
Similarity:775/2446 - (31%) Gaps:874/2446 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 MEPPGRVEFSNSSGGWLDCSASGSPQPTVDWVHADGSAVTEIHGVRRVLRNGTLVLMPFAAAAYH 99
            :.||.||          ..::.|....||.|..:....|.:.:          :.|.|....|.:
Zfish   516 VSPPQRV----------SVNSVGLENMTVCWSPSLDEEVDQYY----------IRLRPQTDQALN 560

  Fly   100 QDVHNTIYRCIASNSVGRIVSRDVQVRAVVAQAYKVDVEVLSAARGCTAI----------LRCVV 154
            ::.......||:.          .|::|  ...|:|||..:..:...|.|          ::..|
Zfish   561 REFWVNSSTCISL----------TQLKA--GGTYEVDVASVKNSNISTLITVQQTLKPHRVQIAV 613

  Fly   155 P----TFVKELVRVVSWVHEPAIYIYPSLQGDGKFHLLPTGELLIHNLQESDESQSFRCRSMHRL 215
            |    |...||     :|..||...|     ||           |....::::|.|..|:...:|
Zfish   614 PYAVGTHSVEL-----FVQMPADSFY-----DG-----------ITITYQNNQSWSRACKDGTKL 657

  Fly   216 TRQ-----------VVVSS-------------------PTRLRINSHRGIISPSVVE-------- 242
            |.:           |.|:|                   ||.:    |.|:::.|.:|        
Zfish   658 TVEKLSPGTQYDFDVFVTSRDARSEGFALPAVRTCLAPPTHV----HAGVVTDSSIELLWDRPEG 718

  Fly   243 -------------HTAHVQVSQDEGAVLLCVAQG--C---PSPEYSWFTHNGAGPLPVLSGPRVR 289
                         .|..||...|..||...|..|  |   ...|..:|..:.|..|.:.:.|...
Zfish   719 EGHYYEALCMNCADTVMVQKVVDTRAVFKDVIAGKLCNISVRTEKEFFRDSPAVYLTIRAAPSSV 783

  Fly   290 LLGPILAIEAVTGEDSGVYKCTAGNVGGEASAELRLTVATPIQVEISPNVLSVHMGGTAEFRCLV 354
            .|.|              ::.|:.::|....|...:|.:..:.:..|..:...:...:.: |...
Zfish   784 SLLP--------------FQRTSVSLGVRWRAYRGVTDSFMLSIRNSTFIFHANQSASDD-RIYQ 833

  Fly   355 TSNGSPVGMQNILWYK--------DGRQLPSSG------RVEDTLVVPRVSRENRGMYQCVVRRP 405
            ..|..|.||     |.        |.|.||:|.      ...|.|:.  :.:|...|:....|.|
Zfish   834 FDNLLPGGM-----YTAEVSSVSGDRRSLPASATANTLPEAPDDLIF--IEQEVNSMFVMWTRPP 891

  Fly   406 ---EGDTFQ---------------ATAELQLGDAPPVLLYSFIEQTL---------------QPG 437
               :|..|:               ..:.:.:.|..|...|||..|:.               :|.
Zfish   892 GRVDGYRFRYGLTDHHPLQHQLDLHESSVSIHDLTPGSDYSFDIQSFLGSDFSQTTSKNISTRPA 956

  Fly   438 PAVSLKCSAAGNPTPQISW--TLDGFPL------PSNGRFMIG-----QYITVHGDVISHVNISH 489
            ...||..|.....:..:||  ...||..      .|:.::.|.     |.:||.|          
Zfish   957 GVCSLFVSDVNVTSATVSWAAAAGGFDFYRVIVRNSSHKWTIDASPHLQEVTVSG---------- 1011

  Fly   490 VMVEDGGEYACIAENRAGRVQ-HAARLNIYGLPYIRLIPKVTAVSGETLNLKCPVAGYPIEEIHW 553
              :..|..|....:.....:. .||.:||:.:|......:|.:||..:.:|            ||
Zfish  1012 --LWSGCSYNTTVQRFRNTISGAAATINIHSVPASPEGLRVISVSPRSFSL------------HW 1062

  Fly   554 -ERGGRELPDDIRQRVQPD-GSLTISPVQKNSDSGVYTCWARNKQGHSARRSGEVTVIVPPKLSP 616
             ...|.|....:  ::.|| |::.|:  ...:|:.|      ..|..|.......||.|....|.
Zfish  1063 LASPGCEKTYQV--QLYPDHGNINIT--TDTADNNV------QAQVSSVTPGTSYTVTVNAVASS 1117

  Fly   617 -FQTNILQLNMGDRASLTCSVVK------GDLPLTINWRKDGRPIDPTQHMSV------------ 662
             |.:.:.::.:....||..:..|      |...:.::||.. .|:||:.|..|            
Zfish  1118 GFSSPVSRILVTTIESLPAAPSKPEGERVGSTGILLSWRMP-MPLDPSIHSFVIRYKEMCPYPDP 1181

  Fly   663 ------KQVDQYNSILVIENLGSDHTGNYSCVVRNSAAEVENSQAL---LVNVPP---------- 708
                  |.:|...::|  ..|....|.|......|.|.....||:|   ....||          
Zfish  1182 SFTEITKSLDIPETLL--NTLTPGATYNIKVAAVNKAGVGPFSQSLYYKTAEAPPGLVSNLTAFA 1244

  Fly   709 --------RWIVEPVDAN-----------------VERNRHI---------MLHCQ------AQG 733
                    .|.: ||..|                 :.|.:.:         :.||.      ::|
Zfish  1245 EDHTSVIVTWFL-PVRINGLITKFAVKVKHARTGQIVRTKELNAEDIMNGALPHCNDAADILSRG 1308

  Fly   734 VPTPS---------------------IVWKKATGSKSGEYEEVRERPFTKLLGNGSLLLQHVKED 777
            .|:||                     .:|......|..|.     ||:|.               
Zfish  1309 TPSPSQTSQLTSAVLPPITLSAVPPASIWSVPISVKIDEL-----RPYTP--------------- 1353

  Fly   778 REGFYLCQANNGIGTGIGKVIQLKV---NSSP--------YFSSTSRSVMVKKGDTALL------ 825
                |:.:.:.....|.|::....|   .::|        ..:.||:||.:......::      
Zfish  1354 ----YVFEVSAFTSDGEGQIASTMVRMPEAAPEDPPQNVVLRNITSKSVSLTWEPPKIITGRFSY 1414

  Fly   826 -------QCAVSGDKPINIVWMRSGKNTLNPSTNYKISV-KQEATPDGVSAELQIRTVDATDSGP 882
                   :..:|.:..|:.:::.:|   |.|.|.|.|.| .:.|...|.:|.:.|.|        
Zfish  1415 VIQLHSSEGLISENSTIDQMFIYTG---LTPYTTYYIHVMAKSAGAAGPAAVINITT-------- 1468

  Fly   883 YFCRASNLYGNDQQLVQLQVQEPPLPPSVLEAAMISSRSVNIKWQPKTLGTGDVTKYIV------ 941
                               :.|.|...|:|:|..:.|.||.:.|:......|.:|.|.:      
Zfish  1469 -------------------LAEAPSAVSLLKAEAVDSTSVRLSWRSPIQPNGLITHYRILVLYHD 1514

  Fly   942 ---------------------------------------------EFREAD-------------- 947
                                                         :|...|              
Zfish  1515 TLVQDITLRGQNLISPLRRNARSLDFTTESVFTLTSHETFSTLGRDFTNTDTEAPSALPLTPSTP 1579

  Fly   948 HSLPPALFV----------------------------------------------------DQWQ 960
            |:.||.|.|                                                    |..|
Zfish  1580 HTPPPWLTVTHDRTDASVQTQTDAVTEDLTTEHPPVTPGTDQSSVNISPSHPHRVTRSTGSDSTQ 1644

  Fly   961 Q-------------IEVKDPPHFNA---------MIENLKPATRYAFRVIAEGSAGRSAPSQELI 1003
            |             ||:......:|         ::..|.|.|.|.|.|.|:...| ..||.|:.
Zfish  1645 QETNPPISAATTVGIEILPATEVSADLSSDQITHVVRRLSPFTEYKFSVSAKNIIG-EGPSTEVT 1708

  Fly  1004 VRTEPQRPAGPPLSLSARPLSSTELLISWVAPLPELRHGDIQGYNVGYKLSSSGNTAYNFTSVSG 1068
            |:|..|.|:... ::|.:.||||.:.:||..||..  :|.|..|.|         .|.|..:   
Zfish  1709 VKTNEQVPSSVQ-NVSYQNLSSTSIRVSWEPPLNP--NGKITHYAV---------YAQNLLT--- 1758

  Fly  1069 DGDGGNGEL---------LLSGLAKFARYTVVVQAFNQVGPGPLS--EPTAAQTMEDVPSRPPED 1122
                 |.||         :|:||.|::.|.|.|.|...||..||:  :.....|:||||..||..
Zfish  1759 -----NQELRQMTDTTTAVLTGLDKYSSYKVRVAASTAVGESPLTNEDYIYVVTLEDVPDSPPRG 1818

  Fly  1123 VRCAALSSQSLQVSWQPPPIYHTNGLLQGYKLIFEPIIDDIQPSKDEVESRKTTALTMVLTGLRK 1187
            :.....:|.:..:||.||.  ..||:::.|::.:        .:.....:..:|:.:..|..|:.
Zfish  1819 LTIVKTTSSTATLSWSPPE--KPNGIIRMYEISY--------TNGTYSNTVNSTSASATLRYLKP 1873

  Fly  1188 YTNYSIQVLAHTRMGDG-VVSKPLFCHSEEDVPEAPA-DIKVVSSSSQSLYISWLPPNEPNGVIT 1250
            :|:|::.|.|.|.:|.| .:|:.|...|.||||.:|. |:...|..|.|:.:||.||...||||.
Zfish  1874 HTHYNVTVRAFTLLGHGEQISETLQMLSGEDVPGSPPYDLSYESIGSSSVNVSWSPPLLANGVIL 1938

  Fly  1251 KYSLYTRVVNGREELNNEKRSLPSQQAYYEAKGLHPHMEYQFWVTASTRVGEGK-SSRVSSQITT 1314
            .|::  ...|..:.||.     .:...|.....|..:..|:..|.|:|:||.|. :|.:.:..|.
Zfish  1939 FYNV--EYWNATQSLNQ-----TTHMPYIVLSNLRKYAHYRISVQAATQVGMGNHTSEILNITTL 1996

  Fly  1315 NRIPAR---------------IISFGGP----------VVRPW--------RSTVTLPCTAVGKP 1346
            ..:|:.               .:|:..|          :||.|        ..|.|....:|..|
Zfish  1997 EDVPSSPPKFLIARKLSDTEVELSWEAPEEANSEILYYIVRVWNLSTEFVANVTETSVVVSVDGP 2061

  Fly  1347 KREWFKSDVALRQGGLHNSQLLDSGDLIISSLQLADGG--NYSCQVDNGIGTDRLTHTLIVQVP- 1408
                          |.:|:.       :.|..:|.|||  .|            :|.:.|...| 
Zfish  2062 --------------GQYNAS-------VSSWTRLGDGGLLIY------------ITFSTIESAPS 2093

  Fly  1409 -PTAPVLYVTSATSSSILMHWKCGFTGNAPITGYTLFYRRANGNTDEMQLSRHASSHE--LKGLM 1470
             |...|:| |..|.|::.:.|:.....|..|..||::|   ..|..|.......|.|:  |..|.
Zfish  2094 DPPQDVVY-TLLTISTVRLSWRPPNEPNGIIQYYTIYY---TDNNTEYTERVPGSEHQLLLSDLQ 2154

  Fly  1471 CGSTYQIHLSAQNKVGT----SPTSTILHVRTQGQSPGHPASTALLAPNSTSLLVRLHSWPDNGC 1531
            .|..|.:.:|:...||.    ||:.....:......|.|..|..:.  :||::::   ||     
Zfish  2155 AGQDYSVWMSSSTSVGDGGLFSPSLNFTTLEDVPSGPVHNLSATIY--SSTAVVI---SW----- 2209

  Fly  1532 PLLYFVLQYRAVTDDPDAEWVLVSNALKPQRRIVINNLQPSTLYQLRMEAHNVAGISQAEFN--- 1593
                          ||         .|:|..|:         .|||.::.   |||:....|   
Zfish  2210 --------------DP---------PLEPNGRV---------YYQLSLQE---AGITHPSINRTV 2239

  Fly  1594 FVTLTKDGDPPPPEIMHRGRSGQTTVIFANINLLIPTI-------AAVSGMFCTIIMIIVCYRHM 1651
            .:|:||             .:..|..:|..:....|.|       :|.|.:..|.::      |:
Zfish  2240 NMTITK-------------TTTDTIYLFTKLRKYFPYIINVTPATSAGSAVNHTTML------HL 2285

  Fly  1652 -----LKNAPPLA-EQSQIQKESLE------NRANSEAAQRERYYATIHKVSMQNNDKIPETS-- 1702
                 :.::|||: ....:...|::      ..||.|..:   |...:...|..|.:...||.  
Zfish  2286 RTDEDVPSSPPLSGSNKNLSSTSIQVSWFPPVEANGEIIE---YAVNLQGPSTSNKNYTSETHLV 2347

  Fly  1703 -EDISPYATFQLSEAGGNMSQPHHGGPANTLLHSFMYHERALAEGCSSPPPAAS-KNRRRHSRKT 1765
             .:::|:..:.||.|.  :::...|.|....||:    :.|   |..|||...: .|...:|...
Zfish  2348 LSELTPFTPYNLSIAA--VTRVGTGPPVVLSLHT----DEA---GPMSPPRNLTIFNHTANSVWL 2403

  Fly  1766 EPESEESESDQDQLTSSRTESSNQHEGKIKHSIIYHGAQSSTSSDLSPMSEQKS-------LPRR 1823
            :.|.....:...||...|....|....:.::|     :.:||.::|.......|       ..|.
Zfish  2404 QWEPSPEPNGVVQLYGFRILELNTDSFRYQNS-----SDASTQAELGGFKPHNSYEISVCTFTRA 2463

  Fly  1824 GRSRYHHQQYQFSTNTT------------------------PRHHNSNKMN-------------- 1850
            |....:.....|:||.:                        |.|.|...:.              
Zfish  2464 GNGDQYSLPVLFTTNESVSDAVGNLSCSGLDWDSVYMEWELPDHPNGEILYYLIRSGDLEDEAHP 2528

  Fly  1851 ---NNTTSNT-----------NTTATNTTATPSTSSNSNKILSPRG--GNLKSISSTFKSQDSIQ 1899
               .:|.::|           .|.|...:|.....:|.:....|..  |...|::.|..:.||:.
Zfish  2529 VVLTHTVAHTLTGLSPHAFYLITVAAVNSAGVGEEANCSAHTPPESVPGPSHSLTVTDVTSDSVS 2593

  Fly  1900 ------CHIPTLVKSPSISTQQ-QKQFHKQQLQNSSTNNSQ 1933
                  .|:|.|::..::..:| .:...:||.|..|...:|
Zfish  2594 VSWQRPVHVPGLLQGYNVEIEQLSRNCERQQQQVESCMEAQ 2634

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam2NP_001261500.1 Ig 30..128 CDD:472250 15/92 (16%)
Ig strand B 49..53 CDD:409353 0/3 (0%)
Ig strand C 62..66 CDD:409353 2/3 (67%)
Ig strand E 86..90 CDD:409353 0/3 (0%)
Ig strand F 106..111 CDD:409353 1/4 (25%)
Ig strand G 119..123 CDD:409353 0/3 (0%)
V-set 138..229 CDD:462230 24/134 (18%)
Ig 238..327 CDD:472250 21/114 (18%)
Ig strand B 255..259 CDD:409353 2/3 (67%)
Ig strand C 268..272 CDD:409353 1/3 (33%)
Ig strand E 293..297 CDD:409353 1/3 (33%)
Ig strand F 307..312 CDD:409353 0/4 (0%)
Ig strand G 320..323 CDD:409353 1/2 (50%)
Ig 330..418 CDD:472250 20/119 (17%)
Ig strand B 348..352 CDD:409353 0/3 (0%)
Ig strand C 365..369 CDD:409353 0/3 (0%)
Ig strand E 383..387 CDD:409353 2/3 (67%)
Ig strand F 397..402 CDD:409353 1/4 (25%)
Ig strand G 411..414 CDD:409353 0/17 (0%)
IgI_4_Dscam 422..517 CDD:409548 23/123 (19%)
Ig strand A 422..425 CDD:409548 1/2 (50%)
Ig strand A' 431..435 CDD:409548 1/18 (6%)
Ig strand B 438..447 CDD:409548 3/8 (38%)
Ig strand C 452..458 CDD:409548 2/7 (29%)
Ig strand C' 460..463 CDD:409548 2/2 (100%)
Ig strand D 468..476 CDD:409548 2/12 (17%)
Ig strand E 480..489 CDD:409548 0/8 (0%)
Ig strand F 496..504 CDD:409548 1/7 (14%)
Ig strand G 507..517 CDD:409548 2/10 (20%)
IgI_5_Dscam 521..608 CDD:409550 17/88 (19%)
Ig strand A 521..523 CDD:409550 1/1 (100%)
Ig strand A' 528..532 CDD:409550 1/3 (33%)
Ig strand B 535..542 CDD:409550 1/6 (17%)
Ig strand C 549..555 CDD:409550 2/6 (33%)
Ig strand C' 556..558 CDD:409550 0/1 (0%)
Ig strand D 565..569 CDD:409550 0/3 (0%)
Ig strand E 572..578 CDD:409550 2/5 (40%)
Ig strand F 586..594 CDD:409550 1/7 (14%)
Ig strand G 598..608 CDD:409550 1/9 (11%)
Ig 611..704 CDD:472250 24/120 (20%)
Ig strand B 630..634 CDD:409353 2/3 (67%)
Ig strand C 644..648 CDD:409353 0/3 (0%)
Ig strand E 670..674 CDD:409353 1/3 (33%)
Ig strand F 684..689 CDD:409353 1/4 (25%)
Ig strand G 697..700 CDD:409353 0/2 (0%)
IgI_7_Dscam 707..802 CDD:409546 22/165 (13%)
Ig strand A 707..711 CDD:409546 2/21 (10%)
Ig strand A' 716..720 CDD:409546 1/20 (5%)
Ig strand B 723..732 CDD:409546 2/23 (9%)
Ig strand C 738..744 CDD:409546 2/26 (8%)
Ig strand C' 750..753 CDD:409546 1/2 (50%)
Ig strand D 761..764 CDD:409546 1/2 (50%)
Ig strand E 767..773 CDD:409546 0/5 (0%)
Ig strand F 780..788 CDD:409546 1/7 (14%)
Ig strand G 793..802 CDD:409546 2/8 (25%)
Ig 806..892 CDD:472250 19/107 (18%)
Ig strand B 823..827 CDD:409353 0/16 (0%)
Ig strand C 836..840 CDD:409353 0/3 (0%)
Ig strand E 868..872 CDD:409353 1/3 (33%)
Ig strand F 882..887 CDD:409353 0/4 (0%)
FN3 <904..1195 CDD:442628 90/440 (20%)
FN3 906..1006 CDD:238020 36/238 (15%)
fn3 1221..1306 CDD:394996 26/86 (30%)
Ig 1336..1396 CDD:409353 11/61 (18%)
Ig strand B 1336..1340 CDD:409353 1/3 (33%)
Ig strand E 1371..1375 CDD:409353 0/3 (0%)
Ig strand F 1385..1390 CDD:409353 1/4 (25%)
FN3 <1407..>1606 CDD:442628 48/209 (23%)
fn3 1408..1491 CDD:394996 26/90 (29%)
ptprqXP_073786317.1 None

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