DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Dscam2 and ptprq

DIOPT Version :9

Sequence 1:NP_001261500.1 Gene:Dscam2 / 38788 FlyBaseID:FBgn0265296 Length:2101 Species:Drosophila melanogaster
Sequence 2:XP_021323628.1 Gene:ptprq / 555426 ZFINID:ZDB-GENE-050419-183 Length:2896 Species:Danio rerio


Alignment Length:2183 Identity:434/2183 - (19%)
Similarity:707/2183 - (32%) Gaps:716/2183 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    97 AYHQDVHNTIYRCIASNSVGRIVSRDVQVRAVVAQAYKVDVEVLSAARGCTAILRCVVPTFVKEL 161
            |||  .|..   .:.|.:...:.|.|.....||.:.::|.:.|..|           |.|...||
Zfish    12 AYH--AHKI---SVLSVTAQGVESSDSTALTVVTEPHRVQIAVPYA-----------VGTHSVEL 60

  Fly   162 VRVVSWVHEPAIYIYPSLQGDGKFHLLPTGELLIHNLQESDESQSFRCRSMHRLTRQ-------- 218
                 :|..||...|     ||           |....::::|.|..|:...:||.:        
Zfish    61 -----FVQMPADSFY-----DG-----------ITITYQNNQSWSRACKDGTKLTVEKLSPGTQY 104

  Fly   219 ---VVVSS----------PTRLRINSHRGIISPSVVE---------------------HTAHVQV 249
               |.|:|          ||.:    |.|:::.|.:|                     .|..||.
Zfish   105 DFDVFVTSRDARSEGLAPPTHV----HAGVVTDSSIELLWDRPEGEGHYYEALCMNCADTVMVQK 165

  Fly   250 SQDEGAVLLCVAQG--C---PSPEYSWFTHNGAGPLPVLSGPRVRLLGPILAIEAVTGEDSGVYK 309
            ..|..||...|..|  |   ...|..:|..:.|..|.:.:.|...  ..::.||........::.
Zfish   166 VVDTRAVFKDVIAGKLCNISVRTEKEFFRDSPAVYLTIRAVPEAP--DDLIFIEQEVNSMFVMWT 228

  Fly   310 CTAGNVGGEASAELRLTVATPI--QVEISPNVLSVHMGGTAEFRCLVTSNGSPVGMQNILWYKDG 372
            ...|.|.| ......||...|:  |:::..:.:|:|        .|...:.....:|:.|     
Zfish   229 RPPGRVDG-YRFRYGLTDHHPLQHQLDLHESSVSIH--------DLTPGSDYSFDIQSFL----- 279

  Fly   373 RQLPSSGRVEDTLVVPRVSRENRGMYQCVVRRPEGDTFQATAELQLGDAPPVLLYSFIEQTLQPG 437
                                              |..|..|....:...|..:...|:.......
Zfish   280 ----------------------------------GSDFSQTTSKNISTRPAGVCSLFVSDVNVTS 310

  Fly   438 PAVSLKCSAAGNPTPQI-------SWTLDGFPLPSNGRFMIGQYITVHGDVISHVNISHVMVEDG 495
            ..||...:|.|....::       .||:|..|..        |.:||.|            :..|
Zfish   311 ATVSWAAAAGGFDFYRVIVRNSSHKWTIDASPHL--------QEVTVSG------------LWSG 355

  Fly   496 GEYACIAENRAGRVQ-HAARLNIYGLPYIRLIPKVTAVSGETLNLKCPVAGYPIEEIHW-ERGGR 558
            ..|....:.....:. .||.:||:.:|......:|.:||..:.:|            || ...|.
Zfish   356 CSYNTTVQRFRNTISGAAATINIHSVPASPEGLRVISVSPRSFSL------------HWLASPGC 408

  Fly   559 ELPDDIRQRVQPD-GSLTISPVQKNSDSGVYTCWARNKQGHSARRSGEVTVIVPPKLSP-FQTNI 621
            |....:  ::.|| |::.|:  ...:|:.|      ..|..|.......||.|....|. |.:.:
Zfish   409 EKTYQV--QLYPDHGNINIT--TDTADNNV------QAQVSSVTPGTSYTVTVNAVASSGFSSPV 463

  Fly   622 LQLNMGDRASLTCSVVK------GDLPLTINWRKDGRPIDPTQHMSV------------------ 662
            .::.:....||..:..|      |...:.::||.. .|:||:.|..|                  
Zfish   464 SRILVTTIESLPAAPSKPEGERVGSTGILLSWRMP-MPLDPSIHSFVIRYKEMCPYPDPSFTEIT 527

  Fly   663 KQVDQYNSILVIENLGSDHTGNYSCVVRNSAAEVENSQAL---LVNVPP---------------- 708
            |.:|...::|  ..|....|.|......|.|.....||:|   ....||                
Zfish   528 KSLDIPETLL--NTLTPGATYNIKVAAVNKAGVGPFSQSLYYKTAEAPPGLVSNLTAFAEDHTSV 590

  Fly   709 --RWIVEPVDAN-----------------VERNRHI---------MLHCQ------AQGVPTPS- 738
              .|.: ||..|                 :.|.:.:         :.||.      ::|.|:|| 
Zfish   591 IVTWFL-PVRINGLITKFAVKVKHARTGQIVRTKELNAEDIMNGALPHCNDAADILSRGTPSPSQ 654

  Fly   739 --------------------IVWKKATGSKSGEYEEVRERPFTKLLGNGSLLLQHVKEDREGFYL 783
                                .:|......|..|.     ||:|.                   |:
Zfish   655 TSQLTSAVLPPITLSAVPPASIWSVPISVKIDEL-----RPYTP-------------------YV 695

  Fly   784 CQANNGIGTGIGKVIQLKV---NSSP--------YFSSTSRSVMVKKGDTALL------------ 825
            .:.:.....|.|::....|   .::|        ..:.||:||.:......::            
Zfish   696 FEVSAFTSDGEGQIASTMVRMPEAAPEDPPQNVVLRNITSKSVSLTWEPPKIITGRFSYVIQLHS 760

  Fly   826 -QCAVSGDKPINIVWMRSGKNTLNPSTNYKISV-KQEATPDGVSAELQIRTVDATDSGPYFCRAS 888
             :..:|.:..|:.:::.:|   |.|.|.|.|.| .:.|...|.:|.:.|.|:     ....|:..
Zfish   761 SEGLISENSTIDQMFIYTG---LTPYTTYYIHVMAKSAGAAGPAAVINITTL-----AEVHCKVC 817

  Fly   889 NLYGNDQQLVQLQVQEPPLPPSVLEAAMISSRSVNIKWQPKTLGTGDVTKYIV------------ 941
            :      .|........|...|:|:|..:.|.||.:.|:......|.:|.|.:            
Zfish   818 S------YLCVFISMSAPSAVSLLKAEAVDSTSVRLSWRSPIQPNGLITHYRILVLYHDTLVQDI 876

  Fly   942 ---------------------------------------EFREAD--------------HSLPPA 953
                                                   :|...|              |:.||.
Zfish   877 TLRGQNLISPLRRNARSLDFTTESVFTLTSHETFSTLGRDFTNTDTEAPSALPLTPSTPHTPPPW 941

  Fly   954 LFV----------------------------------------------------DQWQQ----- 961
            |.|                                                    |..||     
Zfish   942 LTVTHDRTDASVQTQTDAVTEDLTTEHPPVTPGTDQSSVNISPSHPHRVTRSTGSDSTQQETNPP 1006

  Fly   962 --------IEVKDPPHFNA---------MIENLKPATRYAFRVIAEGSAGRSAPSQELIVRTEPQ 1009
                    ||:......:|         ::..|.|.|.|.|.|.|:...| ..||.|:.|:|..|
Zfish  1007 ISAATTVGIEILPATEVSADLSSDQITHVVRRLSPFTEYKFSVSAKNIIG-EGPSTEVTVKTNEQ 1070

  Fly  1010 RPAGPPLSLSARPLSSTELLISWVAPLPELRHGDIQGYNVGYKLSSSGNTAYNFTSVSGDGDGGN 1074
            .|:... ::|.:.||||.:.:||..||..  :|.|..|.|         .|.|..:        |
Zfish  1071 VPSSVQ-NVSYQNLSSTSIRVSWEPPLNP--NGKITHYAV---------YAQNLLT--------N 1115

  Fly  1075 GEL---------LLSGLAKFARYTVVVQAFNQVGPGPLS--EPTAAQTMEDVPSRPPEDVRCAAL 1128
            .||         :|:||.|::.|.|.|.|...||..||:  :.....|:||||..||..:.....
Zfish  1116 QELRQMTDTTTAVLTGLDKYSSYKVRVAASTAVGESPLTNEDYIYVVTLEDVPDSPPRGLTIVKT 1180

  Fly  1129 SSQSLQVSWQPPPIYHTNGLLQGYKLIFEPIIDDIQPSKDEVESRKTTALTMVLTGLRKYTNYSI 1193
            :|.:..:||.||.  ..||:::.|::.:        .:.....:..:|:.:..|..|:.:|:|::
Zfish  1181 TSSTATLSWSPPE--KPNGIIRMYEISY--------TNGTYSNTVNSTSASATLRYLKPHTHYNV 1235

  Fly  1194 QVLAHTRMGDG-VVSKPLFCHSEEDVPEAPA-DIKVVSSSSQSLYISWLPPNEPNGVITKYSLYT 1256
            .|.|.|.:|.| .:|:.|...|.||||.:|. |:...|..|.|:.:||.||...||||..|::  
Zfish  1236 TVRAFTLLGHGEQISETLQMLSGEDVPGSPPYDLSYESIGSSSVNVSWSPPLLANGVILFYNV-- 1298

  Fly  1257 RVVNGREELNNEKRSLPSQQAYYEAKGLHPHMEYQFWVTASTRVGEGKSSRVSSQITTNRIPARI 1321
            ...|..:.||.     .:...|.....|..:..|:..|.|:|:||.|..:.....|||......:
Zfish  1299 EYWNATQSLNQ-----TTHMPYIVLSNLRKYAHYRISVQAATQVGMGNHTSEILNITTLEDGECL 1358

  Fly  1322 ISFGGPVVRPWRSTVTLPCTAVGKPK----REWFKSDVALRQGGLH--NSQLL------------ 1368
            :.|          :.|:|.:   .||    |:...::|.|......  ||::|            
Zfish  1359 LCF----------SQTVPSS---PPKFLIARKLSDTEVELSWEAPEEANSEILYYIVRVWNLSTE 1410

  Fly  1369 -----DSGDLIISSLQLADG-GNYSCQV-------DNGIGTDRLTHTLIVQVP--PTAPVLYVTS 1418
                 ....:::|    .|| |.|:..|       |.|: ...:|.:.|...|  |...|:| |.
Zfish  1411 FVANVTETSVVVS----VDGPGQYNASVSSWTRLGDGGL-LIYITFSTIESAPSDPPQDVVY-TL 1469

  Fly  1419 ATSSSILMHWKCGFTGNAPITGYTLFYRRANGNTDEMQLSRHASSHE--LKGLMCGSTYQIHLSA 1481
            .|.|::.:.|:.....|..|..||::|   ..|..|.......|.|:  |..|..|..|.:.:|:
Zfish  1470 LTISTVRLSWRPPNEPNGIIQYYTIYY---TDNNTEYTERVPGSEHQLLLSDLQAGQDYSVWMSS 1531

  Fly  1482 QNKVGT----SPTSTILHVRT--QGQSPGHPASTALLAP------NSTSLLVRLHSWPDNGCPLL 1534
            ...||.    ||:   |:..|  .||||......|.|..      .|..:.::|.|.|.:.....
Zfish  1532 STSVGDGGLFSPS---LNFTTLEDGQSPHSLRGEAQLCTTFPTDYTSKKIALKLPSGPVHNLSAT 1593

  Fly  1535 YFVLQYRAVTDDPDAEWVLVSNALKPQRRIVINNLQPSTLYQLRMEAHNVAGISQAEFN---FVT 1596
            .:......::.||         .|:|..|:         .|||.::.   |||:....|   .:|
Zfish  1594 IYSSTAVVISWDP---------PLEPNGRV---------YYQLSLQE---AGITHPSINRTVNMT 1637

  Fly  1597 LTKDGDPPPPEIMHRGRSGQTTVIFANINLLIPTI-------AAVSGMFCTIIMIIVCYRHM--- 1651
            :||             .:..|..:|..:....|.|       :|.|.:..|.::      |:   
Zfish  1638 ITK-------------TTTDTIYLFTKLRKYFPYIINVTPATSAGSAVNHTTML------HLRTD 1683

  Fly  1652 --LKNAPPLA-EQSQIQKESLE------NRANSEAAQRERYYATIHKVSMQNNDKIPETS---ED 1704
              :.::|||: ....:...|::      ..||.|..:   |...:...|..|.:...||.   .:
Zfish  1684 EDVPSSPPLSGSNKNLSSTSIQVSWFPPVEANGEIIE---YAVNLQGPSTSNKNYTSETHLVLSE 1745

  Fly  1705 ISPYATFQLSEAGGNMSQPHHGGPANTLLHSFMYHERALAEGCSSPPPAAS-KNRRRHSRKTEPE 1768
            ::|:..:.||.|.  :::...|.|....||:    :.|   |..|||...: .|...:|...:.|
Zfish  1746 LTPFTPYNLSIAA--VTRVGTGPPVVLSLHT----DEA---GPMSPPRNLTIFNHTANSVWLQWE 1801

  Fly  1769 SEESESDQDQLTSSRTESSNQHEGKIKHSIIYHGAQSSTSSDLSPMSEQKSLPRRGRSRYHHQQY 1833
            .....:...||...|....|....:.::|     :.:||.::|.....             |..|
Zfish  1802 PSPEPNGVVQLYGFRILELNTDSFRYQNS-----SDASTQAELGGFKP-------------HNSY 1848

  Fly  1834 QFSTNTTPRHHNSNKMNNNTTSNTNTTATNTTATPSTS 1871
            :.|..|..|..|.::.:......||.:.::.....|.|
Zfish  1849 EISVCTFTRAGNGDQYSLPVLFTTNESVSDAVGNLSCS 1886

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam2NP_001261500.1 Ig 51..127 CDD:299845 7/29 (24%)
Ig 138..>203 CDD:299845 13/64 (20%)
I-set 238..327 CDD:254352 22/114 (19%)
Ig 247..327 CDD:299845 19/84 (23%)
I-set 332..418 CDD:254352 9/85 (11%)
IGc2 344..407 CDD:197706 3/62 (5%)
IG_like 432..517 CDD:214653 16/92 (17%)
IGc2 436..507 CDD:197706 14/77 (18%)
I-set 521..610 CDD:254352 19/90 (21%)
IGc2 533..597 CDD:197706 12/65 (18%)
Ig 630..699 CDD:143165 19/92 (21%)
IG_like 714..802 CDD:214653 19/140 (14%)
Ig 725..802 CDD:299845 15/112 (13%)
Ig 823..894 CDD:143165 15/84 (18%)
FN3 906..1006 CDD:238020 36/238 (15%)
FN3 1013..1111 CDD:238020 30/108 (28%)
FN3 1119..1209 CDD:238020 21/90 (23%)
FN3 1219..1313 CDD:238020 27/94 (29%)
Ig 1336..1402 CDD:143165 19/96 (20%)
FN3 1409..1498 CDD:238020 26/94 (28%)
FN3 1515..1588 CDD:238020 14/72 (19%)
ptprqXP_021323628.1 fn3 209..278 CDD:306538 13/79 (16%)
FN3 301..363 CDD:328772 15/81 (19%)
FN3 382..470 CDD:238020 22/109 (20%)
FN3 475..569 CDD:238020 20/96 (21%)
FN3 723..808 CDD:238020 17/87 (20%)
FN3 829..>864 CDD:238020 11/34 (32%)
FN3 <1033..1067 CDD:238020 12/34 (35%)
FN3 1072..1161 CDD:238020 31/108 (29%)
fn3 1170..1241 CDD:306538 17/80 (21%)
fn3 1264..1340 CDD:306538 25/82 (30%)
fn3 1368..>1410 CDD:306538 8/44 (18%)
FN3 1460..1549 CDD:238020 26/95 (27%)
FN3 1585..1670 CDD:214495 21/118 (18%)
FN3 1697..1768 CDD:238020 14/75 (19%)
FN3 1781..1872 CDD:238020 20/108 (19%)
fn3 1878..1958 CDD:306538 2/9 (22%)
FN3 2029..2133 CDD:238020
FN3 2141..2235 CDD:238020
FN3 2242..2338 CDD:238020
UP_III_II 2354..>2491 CDD:297589
PTPc 2599..2855 CDD:214550
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 60 1.000 Domainoid score I10555
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.000

Return to query results.
Submit another query.