DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dscam2 and igsf9b

DIOPT Version :10

Sequence 1:NP_001261500.1 Gene:Dscam2 / 38788 FlyBaseID:FBgn0265296 Length:2101 Species:Drosophila melanogaster
Sequence 2:XP_686205.6 Gene:igsf9b / 553348 ZFINID:ZDB-GENE-060810-28 Length:2021 Species:Danio rerio


Alignment Length:2001 Identity:411/2001 - (20%)
Similarity:707/2001 - (35%) Gaps:586/2001 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   323 LRLTVATPIQVEISPNVLSVHMGGTAEFRCLVTSNGSPVGMQNIL------WYKDGRQLP----- 376
            ||||::|      .| |:...:||.||..|.:|.........|:.      |.:.|..:|     
Zfish    20 LRLTLST------EP-VVQGRVGGFAELGCSLTPPSEGATTPNLFPLHVVEWVRLGYNVPILIKF 77

  Fly   377 ----------SSGRVE----DTLVVPRVSRENRGMYQC--VVRRPEGDTFQ-ATAELQLGDAPPV 424
                      ..|||.    .:|:|.:::.|:.|.::|  ::.....|.|| .|.......||||
Zfish    78 GSYTPRVHPNYKGRVSLSRGASLMVEKLTLEDEGWFECRILLLDRTSDEFQNGTWNFLSITAPPV 142

  Fly   425 LLYS---FIEQTLQPGPAVSLKCSAAGNPTPQISWTLDGFPLPSNGRFMIG----QYITVHGDVI 482
            .:.:   |:|..|  |.:::|.|.|.|||.|.|.|.          :::..    :.|.|..:.:
Zfish   143 FIKTPPPFLEVLL--GESLTLHCDAHGNPKPTIIWR----------KYLSAAEKQEEIQVLNETL 195

  Fly   483 SHVNISHVMVEDGGEYACIAENRAGRVQHAARLNIYGLPYIRLIPKVTAVS-GETLNLKCPVAGY 546
            |   :|.|..|..|.|.|...|..|.:.|:.:|.:.|.|.|.:.|:.|.:: .:...|:|....|
Zfish   196 S---LSKVTRETAGIYKCHVSNSEGNLTHSTQLQVKGPPIIIIAPEDTTMNMSQDAVLQCQAEAY 257

  Fly   547 PIEEIH--WERGGRELPDDI---RQRVQPDGSLTISPVQKNSDSGVYTCWARNKQGHSARRSGEV 606
            |....:  |::|......:|   |.::..||:|.||.:..: |||.|||...|........|..:
Zfish   258 PSNLTYEWWKQGQNVYHIEILKSRVKILVDGTLLISALIPD-DSGNYTCRPTNGLMTPPAASAYL 321

  Fly   607 TVIVPPKL--SPFQTNILQLNMGDRASLTCSVVKGDLPLTINWRKDGRPIDPTQHMSVKQVDQYN 669
            ||..|.::  .|.:|   .|.||....:.|.|......|.:||.|||..::         ::||.
Zfish   322 TVKHPARVVRMPRET---YLPMGMGGKIPCPVQAEPPMLYVNWTKDGASLN---------LEQYP 374

  Fly   670 SILV-------IENLGSDHTGNYSCVVRNSAAEVENSQ--ALLVNVPPRWIVEP-VDANVERNRH 724
            ..:|       |.....|..|.|:|...||...:..|:  .:::..||.:.|.| .:...|..|.
Zfish   375 GWMVNSEGSVFITAANDDAVGMYTCTAYNSYGTMGQSEPTKVILKDPPSFRVSPRAEYLQEVGRD 439

  Fly   725 IMLHCQAQGVPTPSIVWKKATGSKSGEYEEVRERPFTKLLGNGSLLLQHVKEDREGFYLCQANNG 789
            :::.||:||.|:|:|.|.|...:.        ..||| :|.||||.|:.:.:|.:|.:.|.|:|.
Zfish   440 LVIPCQSQGDPSPNITWIKVGPAP--------RSPFT-VLSNGSLFLRPLSKDHQGTWECLASNR 495

  Fly   790 IGTGIGKVIQLKVNSSPYFSSTSRSVMVKKGDTALLQCAVSGDKPIN-------IVWMR---SGK 844
            :.|.......|.:.:||: :.||.||     |..:.|..||.:...:       .||::   .||
Zfish   496 VATVSVATTILVLGTSPH-AVTSVSV-----DPGIGQANVSWEAGFDGGYTQRFTVWVKPTVRGK 554

  Fly   845 N-----------------TLNPSTNYKISVKQEATPDGVSAELQIRTVDATDSGPYFCRASNLYG 892
            :                 :|.|:|:|:.||..:               :...|||:         
Zfish   555 HEWASIPVPTSKTSLLVTSLQPATSYQFSVLAQ---------------NKLGSGPF--------- 595

  Fly   893 NDQQLVQLQVQEPP------------LPPSVLEAAMISSRSVNIKWQPKTLGTGDVTKYIVEFRE 945
              .::|.::...||            |.|..|.:|..:|..|.::|.|..  ...:|.:.::.:.
Zfish   596 --SEIVTIKTLAPPTESPTVLTTMAVLSPPTLLSANRTSLGVLLQWVPPL--EESLTSFALQAKR 656

  Fly   946 ADHSLPPALFVDQWQQIEVKDPPHFNAMI-ENLKPATRYAFRVIAEGSAGRSAPSQELIVRTEPQ 1009
            ..         .:|..|:.:...:...:| :.|...::|..|:::......|.||..:::.||..
Zfish   657 GK---------GEWVTIDREIAVNMTELIVQGLVKDSKYELRLLSCQDKLVSVPSDSVLISTEGM 712

  Fly  1010 R--PAGPP-LSLSARPLSS----------TELLISWVAPL---------PELRHGDIQGYNVGYK 1052
            .  ||.|. |:....||.:          ..:::|.|...         .:.:..||..   .::
Zfish   713 EMYPAAPSLLAFVPEPLLAGVIGGVCFLFVAIILSLVTACVMNSKRRQRRQKKRDDIPS---AFQ 774

  Fly  1053 LSSSGNTAYNFTSVSGDGDGGNGELLLSGLAKFARYTVVVQAFNQVGPGPLSEPTAAQTMEDVPS 1117
            .||:...  |..|.|.|      .||...|.....:.          |...|...:.::..|..|
Zfish   775 KSSAPQA--NSPSDSPD------SLLKLKLCPPLNFF----------PNSSSSDRSDRSSFDKAS 821

  Fly  1118 RPP-EDVRCAALSSQSLQVSWQPPPIY-----HTNG------LLQGY------KLIFEPIIDDIQ 1164
            |.. :|.:...|||.|      |||.|     |..|      .::..      :.|.:|.:::.:
Zfish   822 RSEYQDQKKQLLSSSS------PPPHYTQFESHFGGTPSPTPAIESISRSPDGRFIIQPDLENFK 880

  Fly  1165 PS--KDEVESRKTTALTMVLTGLRKYTNYS----IQVLAHTRMGDGV-VSKPLFCHSEEDVPEAP 1222
            .:  |:..:|....:......|..|.:|.|    .:..|.|.|...: |..|   |.|.. |.:|
Zfish   881 KNLKKEFPQSPSRGSGRGSSNGSFKESNQSNSARSETNAQTEMPSALTVDHP---HLERP-PHSP 941

  Fly  1223 ADIKVVSSSSQSLYISWLPPNEPNG---VITKYSLYT--------------RVVNGREEL----- 1265
            ..::.::.:. |.:..:...:|..|   ::.:.|.|:              |....|||:     
Zfish   942 GRVRAMARNF-SRHGCFYSDDEHGGSEALLERASFYSDCSEKKASDSLKKYRGAIHREEIFPSLT 1005

  Fly  1266 -NNEKRSLPSQQAYY------------------------------------EAKGLHPHMEYQFW 1293
             ...:|....|||:|                                    |.:.:...:|:   
Zfish  1006 RRTRERDRMLQQAHYQPINGDSQLTEPSTMITQLDGERERDNLSKCLKLAKEREQMEKELEH--- 1067

  Fly  1294 VTASTRV--GEGKSSRVSSQITTNRIPARIISFGGPVVRPWRSTVTLPCTAVGKPKREWFKSDVA 1356
            .|||.||  .|.:..|..|              ..| :|.|        |.|......|...|:.
Zfish  1068 YTASRRVQAHEREQRRAKS--------------ASP-LRKW--------TGVESQDPIWKPQDIQ 1109

  Fly  1357 LRQGGLHNSQLLDSGDLIISSLQLADG------GNYSCQVDNGIGTDRLTHTLIVQVPPTAPVLY 1415
            |||....:|          .:..::|.      ||.|..::.        |       |::...|
Zfish  1110 LRQKSRPSS----------LAQHVSDNRRGCYFGNTSSPMER--------H-------PSSSSSY 1149

  Fly  1416 ----VTSATSSSILMHWKCGFTGNAPITGYTLFYRRANGNTDEMQLS--RHASSHELKGLMCGST 1474
                ::..||.:.|:..:....||.|.:.|....::|..|.:....:  .|:.:.:...|...:.
Zfish  1150 IQWDISPVTSPTSLVPVQSLSEGNTPHSLYPNMRQQAIPNVEGSSATGISHSPATQYTSLSIFTP 1214

  Fly  1475 YQ--------IHLSAQNKVGTSPTSTILHVRT-------------------QGQSPGHPASTALL 1512
            ::        :| .||.:...|.....|..||                   :.:||.|      |
Zfish  1215 HRESSPSRSSLH-GAQARYSESQLEEELPNRTLVEESWLAERKIEKESPPFRSKSPAH------L 1272

  Fly  1513 APNSTSLLVRLHSWPDNGCPLLYFVLQYRAVTDDPDAEWVLVSNALKPQRRIVINNLQPSTLYQL 1577
            :|..:.               |:.||:    ..|.||.    |:.|.|:.:.|.:..:...:.:.
Zfish  1273 SPQPSE---------------LHQVLE----GADRDAN----SHYLDPRSQDVTDKEEEGIVQKD 1314

  Fly  1578 RMEAHNVAGISQAEFNFVTLTKD------------GDPPPPEIMHRGRSGQTTVIFANINLLIPT 1630
            |:.:.|.:|.|...::.....|:            .:.....|..|.|.....|:..:.:.:.|.
Zfish  1315 RLLSRNPSGCSTLPYDHKRGAKEKVIDDSLSILPYNEQEKEGIRARSRKSDKCVLTESPSRISPL 1379

  Fly  1631 IAAVSGMFCTIIMIIVCYRHMLKNAPPLAEQSQIQK--ESLENRANSEAAQRE--------RYYA 1685
            .                   :|:|... ::||...:  ||::.:..|:.|:..        .|.:
Zfish  1380 T-------------------LLENEAE-SDQSNFSRMSESMKVKLASQPARMSPLQTSTILEYLS 1424

  Fly  1686 TIHKVSMQNND--KIPETSEDISPYATFQ-------------------LSEAGGNMSQPHHGGPA 1729
            ....:.|..:|  ::.|.||.:.|....:                   ..:..|.....|..|..
Zfish  1425 LPGFIEMSVDDPVEVTEPSESVEPNVELESGTMLRVEPDVVPKSWEKHSQDLSGTNGVVHDHGTQ 1489

  Fly  1730 NTLLHSFMYHERALAEGCSSPPPAASKNRR--------RHSRKTEPESEESESDQDQLTSSRTES 1786
            |..:      |:...|..|.|.|......|        :.:::..|..|:::|.:..|:.|   |
Zfish  1490 NVPM------EKPKPEDISEPLPQLEARDRCVKSGTSDKSNKRFPPLKEKNKSSEPLLSQS---S 1545

  Fly  1787 SNQHEGKIKHSIIYHG-AQSSTSSDLSPMSEQKSLPRRGRSRYHHQQYQFSTNTTPRHHNSNKMN 1850
            .:|.|     ..|.|| ||:..::..|..:.....|     .:..||||     .|:.|:.    
Zfish  1546 GSQRE-----QFIQHGPAQTLINTAKSMAAIVSKCP-----DFISQQYQ-----RPQIHSD---- 1591

  Fly  1851 NNTTSNTNTTATNTTATP----STSSNSNKILS----PRGGNLKSISSTFKSQDSIQCHIPTLVK 1907
               ::|..::..|....|    |.|....:.||    ||....||||...:.:.|   .:|    
Zfish  1592 ---STNMISSRINQAPVPFMKKSVSIGPCRTLSGAGQPRPFLRKSISLGSRYEHS---ELP---- 1646

  Fly  1908 SPSIS-TQQQKQFHKQQLQNSS-----TNNSQHSSSNPN-SSSLKQQQPLLITPKLHQLEANGQE 1965
            .|..| |..:.||....::..|     |.:..:..|.|: ..|:..|.|...:.:.|.:|.:|. 
Zfish  1647 RPYFSETCYRDQFPNPDIRLKSYSLGRTPSHYYPISGPSWRGSVPYQPPHSYSLERHHIERSGM- 1710

  Fly  1966 LLGLDGIGNSPLVACMPPSSQFRPIPHKSIMPAHEPPHHHNHSQQSHPHQQ 2016
                     :|     |..:.|.|.|.:.:.|:..      ..::|.|.:|
Zfish  1711 ---------TP-----PYQTTFVPNPSRQMEPSLP------SRRESDPRRQ 1741

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam2NP_001261500.1 Ig 30..128 CDD:472250
Ig strand B 49..53 CDD:409353
Ig strand C 62..66 CDD:409353
Ig strand E 86..90 CDD:409353
Ig strand F 106..111 CDD:409353
Ig strand G 119..123 CDD:409353
V-set 138..229 CDD:462230
Ig 238..327 CDD:472250 3/3 (100%)
Ig strand B 255..259 CDD:409353
Ig strand C 268..272 CDD:409353
Ig strand E 293..297 CDD:409353
Ig strand F 307..312 CDD:409353
Ig strand G 320..323 CDD:409353 411/2001 (21%)
Ig 330..418 CDD:472250 24/115 (21%)
Ig strand B 348..352 CDD:409353 2/3 (67%)
Ig strand C 365..369 CDD:409353 1/9 (11%)
Ig strand E 383..387 CDD:409353 1/3 (33%)
Ig strand F 397..402 CDD:409353 1/6 (17%)
Ig strand G 411..414 CDD:409353 1/3 (33%)
IgI_4_Dscam 422..517 CDD:409548 29/101 (29%)
Ig strand A 422..425 CDD:409548 2/2 (100%)
Ig strand A' 431..435 CDD:409548 1/3 (33%)
Ig strand B 438..447 CDD:409548 2/8 (25%)
Ig strand C 452..458 CDD:409548 3/5 (60%)
Ig strand C' 460..463 CDD:409548 0/2 (0%)
Ig strand D 468..476 CDD:409548 0/11 (0%)
Ig strand E 480..489 CDD:409548 1/8 (13%)
Ig strand F 496..504 CDD:409548 3/7 (43%)
Ig strand G 507..517 CDD:409548 3/9 (33%)
IgI_5_Dscam 521..608 CDD:409550 25/92 (27%)
Ig strand A 521..523 CDD:409550 1/1 (100%)
Ig strand A' 528..532 CDD:409550 1/3 (33%)
Ig strand B 535..542 CDD:409550 1/6 (17%)
Ig strand C 549..555 CDD:409550 1/7 (14%)
Ig strand C' 556..558 CDD:409550 1/1 (100%)
Ig strand D 565..569 CDD:409550 1/3 (33%)
Ig strand E 572..578 CDD:409550 3/5 (60%)
Ig strand F 586..594 CDD:409550 4/7 (57%)
Ig strand G 598..608 CDD:409550 1/9 (11%)
Ig 611..704 CDD:472250 25/103 (24%)
Ig strand B 630..634 CDD:409353 0/3 (0%)
Ig strand C 644..648 CDD:409353 1/3 (33%)
Ig strand E 670..674 CDD:409353 1/10 (10%)
Ig strand F 684..689 CDD:409353 2/4 (50%)
Ig strand G 697..700 CDD:409353 0/2 (0%)
IgI_7_Dscam 707..802 CDD:409546 31/95 (33%)
Ig strand A 707..711 CDD:409546 2/3 (67%)
Ig strand A' 716..720 CDD:409546 0/3 (0%)
Ig strand B 723..732 CDD:409546 3/8 (38%)
Ig strand C 738..744 CDD:409546 2/5 (40%)
Ig strand C' 750..753 CDD:409546 0/2 (0%)
Ig strand D 761..764 CDD:409546 1/2 (50%)
Ig strand E 767..773 CDD:409546 4/5 (80%)
Ig strand F 780..788 CDD:409546 3/7 (43%)
Ig strand G 793..802 CDD:409546 1/8 (13%)
Ig 806..892 CDD:472250 22/112 (20%)
Ig strand B 823..827 CDD:409353 0/3 (0%)
Ig strand C 836..840 CDD:409353 1/10 (10%)
Ig strand E 868..872 CDD:409353 0/3 (0%)
Ig strand F 882..887 CDD:409353 1/4 (25%)
FN3 <904..1195 CDD:442628 65/349 (19%)
FN3 906..1006 CDD:238020 19/112 (17%)
fn3 1221..1306 CDD:394996 23/145 (16%)
Ig 1336..1396 CDD:409353 12/65 (18%)
Ig strand B 1336..1340 CDD:409353 0/3 (0%)
Ig strand E 1371..1375 CDD:409353 0/3 (0%)
Ig strand F 1385..1390 CDD:409353 2/4 (50%)
FN3 <1407..>1606 CDD:442628 40/243 (16%)
fn3 1408..1491 CDD:394996 17/96 (18%)
igsf9bXP_686205.6 Ig 28..124 CDD:472250 20/96 (21%)
Ig strand B 38..42 CDD:409353 2/3 (67%)
Ig strand C 61..65 CDD:409353 0/3 (0%)
Ig strand E 98..102 CDD:409353 1/3 (33%)
Ig strand F 112..117 CDD:409353 1/4 (25%)
IG_like 148..227 CDD:214653 26/93 (28%)
Ig strand B 159..163 CDD:409353 1/3 (33%)
Ig strand C 172..176 CDD:409353 1/3 (33%)
Ig strand E 193..197 CDD:409353 1/6 (17%)
Ig strand F 207..212 CDD:409353 2/4 (50%)
Ig strand G 220..223 CDD:409353 1/2 (50%)
Ig_3 230..309 CDD:464046 23/79 (29%)
Ig 346..412 CDD:409353 18/74 (24%)
Ig strand C 358..362 CDD:409353 1/3 (33%)
Ig strand E 382..386 CDD:409353 0/3 (0%)
Ig strand F 396..401 CDD:409353 2/4 (50%)
Ig_3 421..494 CDD:464046 28/81 (35%)
FN3 <514..>725 CDD:442628 48/252 (19%)
PTZ00449 <1677..1959 CDD:185628 17/86 (20%)
Blue background indicates that the domain is not in the aligned region.

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