DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Dscam2 and opcml

DIOPT Version :9

Sequence 1:NP_001261500.1 Gene:Dscam2 / 38788 FlyBaseID:FBgn0265296 Length:2101 Species:Drosophila melanogaster
Sequence 2:NP_001005580.1 Gene:opcml / 449538 ZFINID:ZDB-GENE-040927-3 Length:342 Species:Danio rerio


Alignment Length:306 Identity:78/306 - (25%)
Similarity:118/306 - (38%) Gaps:53/306 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   602 RSGEVTVIVPPKLSPFQTNILQLNMGDRASLTCSVVKGDLPLT-INW---------RKDGRPIDP 656
            |||:         |..:.|| .:..||.|.|.||:   |..:: :.|         ..:...:||
Zfish    32 RSGD---------SYLKDNI-TVRQGDSAVLKCSM---DNKVSRVAWLNRTTILFTGNEKWSLDP 83

  Fly   657 TQHMSVKQVDQYNSILVIENLGSDHTGNYSCVVRNSAAEVENSQALLVNVPPRWIVEPVDANVER 721
            ...:....|::|:..::..||..:  |.|.|.:..:.........|:|.||.|.:....|.:|..
Zfish    84 RVVLLNTAVNEYSIKILNVNLYDE--GPYVCSILTNKKPESTKVHLIVQVPARIVNVSTDVSVNE 146

  Fly   722 NRHIMLHCQAQGVPTPSIVWK--KATGSK---SGEYEEVRERPFTKLLGNGSLLLQHVKEDREGF 781
            ..::.|.|.|.|.|.|||:||  .:.|::   .|||.|                :..:.:|..|.
Zfish   147 GSNVSLMCLAIGRPEPSILWKFRSSKGNRIVTEGEYVE----------------MTGITKDMSGS 195

  Fly   782 YLCQANNGIGTGIGKVIQLKVNSSPYFSSTSRSVMVKKGDTALLQCAVSGDKPINIVWMRSGKNT 846
            |.|..:|.|.....:.:|:.||..|.. |.:||.....|...:|.|..|.....:..|.:..:..
Zfish   196 YDCITSNDISPPDVRTVQVTVNYPPVI-SRARSTGTAVGQKGVLWCEASAVPLADFQWFKGERRI 259

  Fly   847 LNPSTNYKISVKQEATPDGVSAELQIRTVDATDSGPYFCRASNLYG 892
            ||.....||..|      |..:.|....|...|.|.|.|.|.|..|
Zfish   260 LNGFNGVKIENK------GKQSMLTFFNVSEEDYGNYTCVAINTLG 299

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam2NP_001261500.1 Ig 51..127 CDD:299845
Ig 138..>203 CDD:299845
I-set 238..327 CDD:254352
Ig 247..327 CDD:299845
I-set 332..418 CDD:254352
IGc2 344..407 CDD:197706
IG_like 432..517 CDD:214653
IGc2 436..507 CDD:197706
I-set 521..610 CDD:254352 3/7 (43%)
IGc2 533..597 CDD:197706
Ig 630..699 CDD:143165 15/78 (19%)
IG_like 714..802 CDD:214653 24/92 (26%)
Ig 725..802 CDD:299845 22/81 (27%)
Ig 823..894 CDD:143165 19/70 (27%)
FN3 906..1006 CDD:238020
FN3 1013..1111 CDD:238020
FN3 1119..1209 CDD:238020
FN3 1219..1313 CDD:238020
Ig 1336..1402 CDD:143165
FN3 1409..1498 CDD:238020
FN3 1515..1588 CDD:238020
opcmlNP_001005580.1 Ig 41..129 CDD:299845 20/93 (22%)
IG_like 41..129 CDD:214653 20/93 (22%)
IG_like 139..216 CDD:214653 24/92 (26%)
IGc2 146..202 CDD:197706 19/71 (27%)
I-set 219..307 CDD:254352 24/88 (27%)
ig 223..307 CDD:278476 23/83 (28%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.900

Return to query results.
Submit another query.