DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Dscam2 and klg

DIOPT Version :9

Sequence 1:NP_001261500.1 Gene:Dscam2 / 38788 FlyBaseID:FBgn0265296 Length:2101 Species:Drosophila melanogaster
Sequence 2:NP_524454.2 Gene:klg / 42707 FlyBaseID:FBgn0017590 Length:545 Species:Drosophila melanogaster


Alignment Length:695 Identity:141/695 - (20%)
Similarity:214/695 - (30%) Gaps:249/695 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   525 LIPKVTA-------VSG----------ETLNLKCPV----------------AGYPIEEIHWERG 556
            |.|.:||       .||          ..|.:.||:                .|:.:|.....||
  Fly    13 LAPPITAHASANANASGLRKSSQRRNRAPLQMNCPILIVISLGWLLHAHAGSGGFAVEAAISNRG 77

  Fly   557 GRELPDDIRQRVQPDGSLTISPVQKNSDSGVYTCWARNKQGHSARRSGEVTVIVPPKLSPFQTNI 621
                          ..|.::|.||:                 ||..:..:|..:|..||...|  
  Fly    78 --------------SNSRSMSNVQQ-----------------SAVAASTLTATLPRFLSRGHT-- 109

  Fly   622 LQLNMGDRASLTCSVVK-GDLPLTINWRK-----DGRPIDPTQHMSVKQVDQYNSILVIENLGSD 680
            .:..:||...|.|.|.. |:..|.  ||:     ....|..|:...|:.:|.||  |.|.:|...
  Fly   110 YRAVVGDTLVLPCQVENLGNFVLL--WRRGTNVLTASNIMVTRDERVRLIDGYN--LEISDLEPQ 170

  Fly   681 HTGNYSCVV-----RNSAAEVENSQALLVNVPPRWIVEPVDANVERNR--HIMLHCQAQGVPTPS 738
            ..|:|.|.:     |:....||      :.|||.....|....::..:  .|.|.|:..|.|.||
  Fly   171 DAGDYVCQISDKINRDQVHTVE------ILVPPSVRAIPTSGQLQARKGGPITLECKGSGNPVPS 229

  Fly   739 IVWKKATGSKSGEYEEVRERPFTKLLGNGSLL-LQHVKEDREGFYLCQANNGIGTGIGKVIQLKV 802
            |.|.|.:|:...          |..:|:|.:| |:.::..:.|.|.|.|:||:|..:...::|.|
  Fly   230 IYWTKKSGANKS----------TARIGDGPILTLEKLERQQAGVYQCTADNGVGDPVTVDMRLDV 284

  Fly   803 NSSPYFSSTSRSVMVKKGDTALLQCAVSGDKPINIVWMRSGKNTLNPSTNYKISVKQEATPDGVS 867
            ...|........:...:|..|.|.|.|..|....:.|             |:.|...::|...:.
  Fly   285 LYPPDIQVEKSWIHSGEGFEAKLVCIVFADPVATVSW-------------YQNSFPIQSTDRRIM 336

  Fly   868 AE------LQIRTVDATDSGPYFCRASNLYGNDQQLVQLQVQEPPLPPSVLEAAM----ISSRSV 922
            |.      |.||.:...|.|.|.|.|.|..|..::.::|..:     |...|...    .|..|.
  Fly   337 ATRANRHMLTIRHIQQEDFGNYSCVADNSLGRSRKYMELSGR-----PGAAEFYSPKWGRSPDSY 396

  Fly   923 NIKWQPKTLGTGDVTKYIVEFREADHSLPPALFVDQWQQIEVKDPPHFNAMIENLKPATRYAFRV 987
            |:.|:                            :|.:..:|                ..|..:|.
  Fly   397 NLTWK----------------------------IDSYPPLE----------------EVRLLYRR 417

  Fly   988 IAEGSAGRSAPSQELIVRTEPQRPAGPPLSLSARPLSSTELLISWVAPLPELRHGDIQGYNV--- 1049
            :......:........:.|...|||..||:                         .|..|.:   
  Fly   418 VQMNETYQQPGRWHDFILTPEHRPASEPLT-------------------------HIMSYTIKNL 457

  Fly  1050 ---GYKLSSSGNTAYNFTSVSGDGDGGNGELLLSGLAKFARYTVVVQAFNQVGPGPLSEP---TA 1108
               ||                                    |..:|||.|:.|...:|:.   ..
  Fly   458 HPGGY------------------------------------YEAIVQAKNRYGWNEVSDIFQFVV 486

  Fly  1109 AQTMEDVPSRPPEDVRCAALS---SQSLQVSWQP-PPIYHTNGLL 1149
            |...:|:   .|||....|.|   |.|..:...| ..:.||..||
  Fly   487 ATNSQDI---GPEDAEVVASSKSRSNSASIGSLPGSTVLHTALLL 528

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam2NP_001261500.1 Ig 51..127 CDD:299845
Ig 138..>203 CDD:299845
I-set 238..327 CDD:254352
Ig 247..327 CDD:299845
I-set 332..418 CDD:254352
IGc2 344..407 CDD:197706
IG_like 432..517 CDD:214653
IGc2 436..507 CDD:197706
I-set 521..610 CDD:254352 20/117 (17%)
IGc2 533..597 CDD:197706 13/89 (15%)
Ig 630..699 CDD:143165 22/79 (28%)
IG_like 714..802 CDD:214653 25/90 (28%)
Ig 725..802 CDD:299845 24/77 (31%)
Ig 823..894 CDD:143165 20/76 (26%)
FN3 906..1006 CDD:238020 10/103 (10%)
FN3 1013..1111 CDD:238020 14/106 (13%)
FN3 1119..1209 CDD:238020 12/35 (34%)
FN3 1219..1313 CDD:238020
Ig 1336..1402 CDD:143165
FN3 1409..1498 CDD:238020
FN3 1515..1588 CDD:238020
klgNP_524454.2 DUF1370 63..>124 CDD:284518 19/93 (20%)
IG_like 109..195 CDD:214653 25/97 (26%)
Ig 118..191 CDD:143165 20/76 (26%)
IG_like 205..274 CDD:214653 22/78 (28%)
IGc2 213..273 CDD:197706 22/69 (32%)
IGc2 301..367 CDD:197706 20/78 (26%)
FN3 392..486 CDD:238020 25/198 (13%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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