DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dscam2 and Sdk2

DIOPT Version :9

Sequence 1:NP_001261500.1 Gene:Dscam2 / 38788 FlyBaseID:FBgn0265296 Length:2101 Species:Drosophila melanogaster
Sequence 2:XP_006247755.1 Gene:Sdk2 / 360652 RGDID:1310397 Length:2175 Species:Rattus norvegicus


Alignment Length:1907 Identity:462/1907 - (24%)
Similarity:741/1907 - (38%) Gaps:406/1907 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   330 PIQVEISPNVLSVHMGGTAEFRCLVT--SNGS-PVGMQNILWYKDGRQLPSSGRVEDTLVVPRVS 391
            |...:..|....||:.|.   |.::|  :.|| |:..:   |..:.|:| :...:|...::..:.
  Rat    28 PPYFKTEPVRTQVHLEGN---RLVLTCMAEGSWPLEFK---WLHNNREL-TRFSLEYRYMITSLD 85

  Fly   392 RENRGMYQCVVRRPEGDTFQATAELQLGDAPPVLLYSFIE----QTLQPGPAVSLKCSAAGN-PT 451
            |.:.|.|:|:||...|...|...|:|:     ..:.||.|    |::..|.|..:|.....: |.
  Rat    86 RTHAGFYRCIVRNRMGALLQRQTEVQV-----AYMGSFEEGEKHQSVSHGEAAVIKAPRISSFPR 145

  Fly   452 PQISWTLDGFPLPSNGRFMIGQYITVHGDVISHVNISHVMVEDGGEYACIA------ENRAGRVQ 510
            ||::|..||..:|.:.|..    ||:...::    |...:..|.|.|...|      :|:..:..
  Rat   146 PQVTWFRDGRKIPPSSRIA----ITLENTLV----ILSTVAPDAGRYYVQAVNDKNGDNKTSQPI 202

  Fly   511 HAARLNIYG-----LPYIRLIPKVTAVSGET--LNLKCPVAGYPIEEIH--WERGGRELPD---D 563
            ..|..|:.|     .|.|.:.||.|:|...|  :.::|.....|:.::|  |::.|..|.:   |
  Rat   203 TLAVENVGGPADPIAPTIIIPPKNTSVVAGTSEVTMECVANARPLIKLHIVWKKDGALLSNGISD 267

  Fly   564 IRQRVQPDGSLTI-SPVQKNSDSGVYTCWA--RNKQGHSARRSGEVTVIVPPKLSPFQTNILQLN 625
            ..:|      ||| :|:.  ||:|.|.|.|  |:.......|...::|:.||:........:...
  Rat   268 YNRR------LTITNPMV--SDAGYYECEAMLRSSSVAPVTRGAYLSVLEPPQFVREPERHITAE 324

  Fly   626 MGDRASLTCSVVKGDLPLTINWRKDGRPIDPTQHMSVKQVDQYNSILVIENLGSDHTGNYSCVVR 690
            |.....:.|. .||..|.:|.|.||...::..:....||  :.:..|.|..|..|.||...|...
  Rat   325 MEKVVDIPCR-AKGVPPPSITWYKDAALVEVGKLTRFKQ--RSDGGLQISGLLPDDTGMVQCFAH 386

  Fly   691 NSAAEVENSQALLV-NVPPRWIVEPVDANVERNRHIMLHCQAQGVPTPSIVWKK-----ATGSKS 749
            |:|.|.:.|..|.| ::.|.....|:|:.|.....::|.|:..|.|.|:|.|:|     |:||  
  Rat   387 NAAGEAQTSTYLAVTSIAPNITRGPLDSTVIDGMSVVLACETSGAPRPAITWQKGERILASGS-- 449

  Fly   750 GEYEEVRERPFTKLLGNGSLLLQHVKEDREGFYLCQANNGIGTGIGKVIQLKVNSSPYFSSTSRS 814
                 |:...|| ||.:||||:........|.|.|.|.|..|...... .|.|.:....:...:.
  Rat   450 -----VQLPRFT-LLESGSLLISPTHISDAGTYTCLATNSRGVDEASA-DLVVWARTRITKPPQD 507

  Fly   815 VMVKKGDTALLQCAVSGDKPINI--VWMRSGKNTLNPSTNYKISVKQEATPDGVSAELQIRTVDA 877
            ..|.||..|.:.|.|:.|..:.:  ||.:.|. ||...||.:|.:.:       :..|.|....:
  Rat   508 QSVIKGTQASMVCGVTHDPRVTVRYVWEKDGA-TLAVETNPRIRLDR-------NGSLHISQTWS 564

  Fly   878 TDSGPYFCRASNLYGNDQQLVQLQVQEPPLPPS--VLEAAMISSRSVNIKWQPKTLGTGDVTKYI 940
            .|.|.|.||..:..|||.:...|:|::.|..|.  |...:.:..|::|:.|.....|...:.:||
  Rat   565 GDIGTYTCRVLSAGGNDSRNAHLRVRQLPHAPEHPVATLSTMERRAINLTWAKPFDGNSPLMRYI 629

  Fly   941 VEFREADHSLPPALFVDQWQQIEVK-DPPHFNAMIENLKPATRYAFRVIAEGSAGR---SAPSQE 1001
            :|..|  ::.|       |..:... ||...:.|::.|.||..|.||:.|....|:   |..::.
  Rat   630 LEMSE--NNAP-------WTILLASVDPEATSVMVKGLVPARSYQFRLCAVNDVGKGQFSKDTER 685

  Fly  1002 LIVRTEPQRPAGPPLSLSARPLSSTELLISWVAPLPELRHGDIQGYNVGYKLSSSGNTAYNFTSV 1066
            :.:..||  |..||.::.|...::..::|.|..|....::|.::||.:.|.|:.. ...|.|.::
  Rat   686 VSLPEEP--PTAPPQNVIASGRTNQSIMIQWQPPPESHQNGILKGYIIRYCLAGL-PVGYQFKNI 747

  Fly  1067 SGDGDGGNGELLLSGLAKFARYTVVVQAFNQVGPGPLSEPTAAQTMEDVPSRPPEDVRCAALSSQ 1131
            : |.|..|  |||..|..:..|.:.|.|:|..|.|..|......|::.||:.||.:|...|.:|.
  Rat   748 T-DADVNN--LLLEDLIIWTNYEIEVAAYNSAGLGVYSSKVTEWTLQGVPTVPPGNVHAEATNST 809

  Fly  1132 SLQVSWQPPPIYHTNGLLQGYKLI-FEPIIDDIQPSKDEVESRKTTALTMV-------------- 1181
            :::.:|..|.....||:.|||||| :||      ..::||        |||              
  Rat   810 AIRFTWNAPSPQFINGINQGYKLIAWEP------TQEEEV--------TMVTARPNFQDSIHVGF 860

  Fly  1182 LTGLRKYTNYSIQVLAHTRMGDGVVSKPLFCHSEEDVPEAPADIKVVSSSSQSLYISWLPPNEPN 1246
            ::||:|:|.|...||..|..|||..|.|....:.||||.....:........||.:||..|.|.|
  Rat   861 VSGLKKFTEYFTSVLCFTTPGDGPRSSPQLVRTHEDVPGPVGHLSFNDILDTSLKVSWQEPGEKN 925

  Fly  1247 GVITKYSLYTRVVNGREELNNEK----RSLPSQQAYYEAKGLHPHMEYQFWVTASTRVGEGKSSR 1307
            |::|.|.:      ..||.|...    ..||:....|...||.....|...|.|.|..|:|   :
  Rat   926 GILTGYRI------SWEEYNRTNTRVTHYLPNVTLEYRVTGLTALTTYTIEVAAMTSKGQG---Q 981

  Fly  1308 VSSQITTNRIPARI--------ISFGGPVVRPWRSTVTLPC-------TAVGKPKREWFKSDVAL 1357
            ||:...::.:|..:        ||..||      .:|||..       |::.:    |    |..
  Rat   982 VSASTISSGVPPELPGAPTNLGISNIGP------RSVTLQFRPGYDGKTSISR----W----VVE 1032

  Fly  1358 RQGGLHNS--------QLLDSGDLIISSLQLADGGNYSC------QVDNGIGT------DRLTHT 1402
            .|.|:...        ||.:..|  ..|:::.|...::.      || |.:||      .|...|
  Rat  1033 AQVGMIGEGEEWLLIYQLSNEPD--ARSMEVPDLNPFTYYSFRMRQV-NIVGTSPPSQPSRKIQT 1094

  Fly  1403 LIVQVPPTAPVLYVT--SATSSSILMHW----KCGFTGNAPITGYTLFYRRANG------NTDEM 1455
            |  |.||......||  :|:.:|:.:.|    :..:.||....||.:.|.|::|      :|.:.
  Rat  1095 L--QAPPDMAPANVTLRTASETSLWLRWMPLPEMEYNGNPESVGYKIKYSRSDGHGKTLSHTVQD 1157

  Fly  1456 QLSRHASSHELKGLMCGSTYQIHLSAQNKVGTSPTSTILHVRTQGQSPGH-PASTALLAPNSTSL 1519
            ::.|..:..:|:.   .:.|::.:.|.|.:|:.|.|..:..||:...|.. |.:.:.||..|:|:
  Rat  1158 RVEREYTIEDLEE---WTEYRVQVQAFNAIGSGPWSQAVVGRTRESVPSSGPTNVSALATTSSSM 1219

  Fly  1520 LVRLHSWPD---NGCPLLYFVLQYRAVTDDPDAE-WVLVSNALKPQRRIVINNLQPSTLYQLRME 1580
            |||....|:   ||..|.|.| :|:....|..|. |::..|:   .|...:..|....||::::.
  Rat  1220 LVRWSEIPEADRNGLVLGYKV-RYKEKDSDSQARFWLVEGNS---SRSAQLTGLGKYVLYEVQVL 1280

  Fly  1581 AHNVAGISQAEFNFVTLTKDGDPPPPEIMHRGRSGQTTVIFANINLLIPTIAAVSGMF-----CT 1640
            |....|             ||.|..|.|:.|...   .|....:.:|.|.:...|...     .|
  Rat  1281 AFTRIG-------------DGSPSHPPILERTLD---DVPGPPMGILFPEVRTTSVRLIWQPPAT 1329

  Fly  1641 IIMIIVCYR--HMLKNA-----------PPLAEQ---SQIQKESL--------ENRANSEAAQ-- 1679
            ...||:.|:  |.| ||           .|.|.|   :.::.||:        ..:...|||:  
  Rat  1330 PNGIILAYQITHRL-NATTANTATVEVLAPSARQYMATGLKPESVYLFRITAQTRKGWGEAAEAL 1393

  Fly  1680 ------RERYYATIHKVSMQNNDKIPET-------SEDISP--YATFQLSEAGGNMSQPHHGGPA 1729
                  |:|.......|..|.:.|....       |:.:||  |.|.|..|.           |:
  Rat  1394 VVTTEKRDRPQPPSKPVVQQEDVKARSVLLSWEPGSDGLSPVRYYTIQTREL-----------PS 1447

  Fly  1730 NT-LLHSFMYHERALAEGCSSPPPAASKNRRRHSRKTEPESEESESDQDQLTSSRTE-------- 1785
            .. .|||......|.|.......|..|...|..:.....:||.|| :.:.||:.:..        
  Rat  1448 GRWALHSASVSHNASAFTVDRLKPFTSYKFRVKATNDIGDSEFSE-ESESLTTLQAAPDEAPTIL 1511

  Fly  1786 SSNQH-------------EGKIK----------HSIIYHGAQSSTS----------SDLSPMSEQ 1817
            |...|             |.||.          ..::|.|.:..|.          ::|:.:...
  Rat  1512 SVTPHTTTSVLIRWQPPSEDKINGILLGFRIRYRELLYEGLRGFTLRGINNPGAKWAELTSLYSM 1576

  Fly  1818 KSLPRRGRSRYH------HQQYQ--------------------FSTNTTPRHHNSNKMNNNTTSN 1856
            ::|.|...::|.      |::|:                    |.....|.....|...::.|: 
  Rat  1577 RNLTRPSLTQYELDNLTKHRRYEIRMSVYNAVGEGPLSPPQEVFVGEAVPTAAPQNVAIHSATA- 1640

  Fly  1857 TNTTATNTTATPSTSSNSNKILS---------PRGGNLKSISSTFKSQDSIQC-----HIPTLVK 1907
               |..:.|..|....|.|..:.         .|....:.:.:.|.:::|::.     :...:|.
  Rat  1641 ---TQLDVTWEPPPLDNQNGDIQGYKIYFWEVQRRNLTERVKTLFLAENSVKLKNLTGYTAYMVS 1702

  Fly  1908 SPSI--------STQQQKQFHKQQLQNSSTNNSQHSSSNPNSSSLKQQQPLLITPKLHQLEANGQ 1964
            ..:.        ||..|.|  .||...|:..:.:.|.....|.::....|......|.......:
  Rat  1703 VAAFNAAGDGPRSTPTQGQ--TQQAAPSAPGSVKFSELTTTSVNVSWDAPQFPNGPLEGYRLVYE 1765

  Fly  1965 ELLGLDGI---------GNSPL 1977
            ....:||:         |||||
  Rat  1766 PCTPVDGVSKIVTVDVKGNSPL 1787

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam2NP_001261500.1 Ig 51..127 CDD:299845
Ig 138..>203 CDD:299845
I-set 238..327 CDD:254352
Ig 247..327 CDD:299845
I-set 332..418 CDD:254352 22/88 (25%)
IGc2 344..407 CDD:197706 16/65 (25%)
IG_like 432..517 CDD:214653 21/91 (23%)
IGc2 436..507 CDD:197706 19/77 (25%)
I-set 521..610 CDD:254352 28/98 (29%)
IGc2 533..597 CDD:197706 20/73 (27%)
Ig 630..699 CDD:143165 20/68 (29%)
IG_like 714..802 CDD:214653 30/92 (33%)
Ig 725..802 CDD:299845 27/81 (33%)
Ig 823..894 CDD:143165 20/72 (28%)
FN3 906..1006 CDD:238020 25/105 (24%)
FN3 1013..1111 CDD:238020 27/97 (28%)
FN3 1119..1209 CDD:238020 34/104 (33%)
FN3 1219..1313 CDD:238020 27/97 (28%)
Ig 1336..1402 CDD:143165 19/92 (21%)
FN3 1409..1498 CDD:238020 22/100 (22%)
FN3 1515..1588 CDD:238020 22/76 (29%)
Sdk2XP_006247755.1 IG_like 43..112 CDD:214653 19/75 (25%)
IGc2 43..101 CDD:197706 16/64 (25%)
IG_like 123..206 CDD:214653 20/90 (22%)
Ig 135..191 CDD:299845 16/63 (25%)
IG_like 225..307 CDD:214653 24/89 (27%)
IGc2 236..289 CDD:197706 17/60 (28%)
I-set 311..400 CDD:254352 24/91 (26%)
Ig 329..397 CDD:143165 21/70 (30%)
I-set 405..495 CDD:254352 31/98 (32%)
Ig 419..495 CDD:299845 27/84 (32%)
Ig 505..589 CDD:299845 26/91 (29%)
IG_like 505..589 CDD:214653 26/91 (29%)
FN3 593..684 CDD:238020 25/99 (25%)
FN3 696..789 CDD:238020 27/96 (28%)
FN3 797..893 CDD:238020 35/109 (32%)
FN3 898..986 CDD:238020 27/96 (28%)
FN3 996..1090 CDD:238020 22/110 (20%)
FN3 1102..1197 CDD:238020 21/97 (22%)
FN3 1204..1293 CDD:238020 28/105 (27%)
FN3 1304..1397 CDD:238020 19/93 (20%)
FN3 1403..1487 CDD:238020 19/94 (20%)
FN3 1506..1619 CDD:238020 14/112 (13%)
FN3 1629..1722 CDD:238020 15/98 (15%)
FN3 1727..1808 CDD:238020 12/61 (20%)
FN3 1840..1919 CDD:238020
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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