DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dscam2 and DIP-kappa

DIOPT Version :9

Sequence 1:NP_001261500.1 Gene:Dscam2 / 38788 FlyBaseID:FBgn0265296 Length:2101 Species:Drosophila melanogaster
Sequence 2:NP_723828.1 Gene:DIP-kappa / 318958 FlyBaseID:FBgn0051814 Length:672 Species:Drosophila melanogaster


Alignment Length:569 Identity:131/569 - (23%)
Similarity:217/569 - (38%) Gaps:145/569 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   624 LNMGDRASLTCSV--VKGDLPLTINW-RKDGRPIDPTQHMSVKQVDQ----YNS----ILVIENL 677
            :::|..|.:.|.|  :||   ..:.| |.|.:.|....|..:.|..:    ||.    .|.|:.:
  Fly    85 VSVGRDALMACVVENLKG---YKVAWVRVDTQTILSIHHNVISQNSRISLTYNDHRSWYLHIKEV 146

  Fly   678 GSDHTGNYSCVVRNSAAEVENSQALLVNVPPRWIVEPVDAN---VERNRHIMLHCQAQGVPTPSI 739
            .....|.|.|.| |:.........|.|.||| .|||.:.:|   |...::|.|.|:|:|.|.|.:
  Fly   147 EETDRGWYMCQV-NTDPMRSRKGYLQVVVPP-IIVEGLTSNDMVVREGQNISLVCKARGYPEPYV 209

  Fly   740 VWKKATGSK---SGEYEEVRERPFTKLLGNGSLL-LQHVKEDREGFYLCQANNGIGTGIGKVIQL 800
            :|::..|.:   .||:..|.:         |.|| :..|.......|||.|:||:...|.|.:.|
  Fly   210 MWRREDGEEMLIGGEHVNVVD---------GELLHITKVSRLHMAAYLCVASNGVPPSISKRVHL 265

  Fly   801 KVNSSPYFSSTSRSVMVKKGDTALLQCAVSGDKPINIVWMRSGKNTLNPSTNYKISVKQEATPDG 865
            :|...|..|..::......|...:|:|.... .|.:|.:..:.:..:..|...:...|.|.| ..
  Fly   266 RVQFPPMLSIPNQLEGAYLGQDVILECHTEA-YPASINYWTTERGDMIISDTSRAGDKYETT-ST 328

  Fly   866 VSA-----ELQIRTVDATDSGPYFCRASNLYGNDQQLVQLQVQEPPLPPSVLEAAM-ISSRSVNI 924
            ||.     :|:||.|...|.|.|.|.|.|..|.....::|  .|.|.|.:.:.:.| :.:||.:.
  Fly   329 VSGYTKYMKLKIRAVGPNDFGTYRCVAKNSLGETDGNIKL--DEMPTPTTAIISEMSLLNRSYDG 391

  Fly   925 KWQPKTLGTGDVTKYIVEFREADHSLPPALFVDQWQQIEVKDPPHFNAMIENLKPATRYAFRVIA 989
            |.:.:       .|:     ::.::||. ..|::|:                             
  Fly   392 KRRHR-------NKF-----DSANALPD-YGVEEWR----------------------------- 414

  Fly   990 EGSAGRSAPSQELIVRTEPQRPAGPPLSLSARPLSSTELLISWVAPLPELRHGDIQGYNVGYKLS 1054
            :|:.|.:|.:.....:|..:.|.| ....||..|:...||...:..:      ..|.:.:..:||
  Fly   415 DGAQGNNAGNNGDNNQTPVRNPPG-AFHNSAGSLAQHNLLAKIMLGI------KTQSFGIFKRLS 472

  Fly  1055 SSGNTAYNFTSVSGDGDGGNGELLLSGLAKFARYTVVVQAFNQVGPGPLSEPTAAQTMEDVPSRP 1119
            ||...|           .|...|.||.|:.                  :|.|:..: |.:|.:||
  Fly   473 SSLPLA-----------AGQSFLWLSTLSL------------------VSAPSRWR-MSNVENRP 507

  Fly  1120 --PEDV--------------RCAALS--SQSLQVSWQPP------PIYH 1144
              ||.|              .|.:.|  :.:.:::.:||      .|:|
  Fly   508 NSPETVVNNDTAAECWETRSHCVSESNNNNNSRITQRPPMWARHLRIFH 556

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam2NP_001261500.1 Ig 51..127 CDD:299845
Ig 138..>203 CDD:299845
I-set 238..327 CDD:254352
Ig 247..327 CDD:299845
I-set 332..418 CDD:254352
IGc2 344..407 CDD:197706
IG_like 432..517 CDD:214653
IGc2 436..507 CDD:197706
I-set 521..610 CDD:254352
IGc2 533..597 CDD:197706
Ig 630..699 CDD:143165 20/79 (25%)
IG_like 714..802 CDD:214653 27/94 (29%)
Ig 725..802 CDD:299845 25/80 (31%)
Ig 823..894 CDD:143165 21/75 (28%)
FN3 906..1006 CDD:238020 14/100 (14%)
FN3 1013..1111 CDD:238020 19/97 (20%)
FN3 1119..1209 CDD:238020 10/50 (20%)
FN3 1219..1313 CDD:238020
Ig 1336..1402 CDD:143165
FN3 1409..1498 CDD:238020
FN3 1515..1588 CDD:238020
DIP-kappaNP_723828.1 Ig 80..172 CDD:299845 22/90 (24%)
IG_like 82..174 CDD:214653 23/92 (25%)
IG_like 184..267 CDD:214653 27/91 (30%)
IGc2 191..255 CDD:197706 21/72 (29%)
IG_like 282..368 CDD:214653 22/87 (25%)
Ig 288..367 CDD:143165 21/80 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.810

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