DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dscam2 and Ncam1

DIOPT Version :9

Sequence 1:NP_001261500.1 Gene:Dscam2 / 38788 FlyBaseID:FBgn0265296 Length:2101 Species:Drosophila melanogaster
Sequence 2:XP_038936733.1 Gene:Ncam1 / 24586 RGDID:67378 Length:1136 Species:Rattus norvegicus


Alignment Length:1491 Identity:311/1491 - (20%)
Similarity:479/1491 - (32%) Gaps:520/1491 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   325 LTVATPIQVEISPNVLSVHMGGTAEFRCLVTSNGSPVGMQNILWYK-DGRQL-PSSGRV------ 381
            |..|..:||:|.|:...:.:|.:..|.|.|..:...   ::|.|:. :|.:| |:..|:      
  Rat    14 LGTAVSLQVDIVPSQGEISVGESKFFLCQVAGDAKD---KDISWFSPNGEKLSPNQQRISVVWND 75

  Fly   382 --EDTLVVPRVSRENRGMYQCVVRRPEGDTFQATAELQLGDAPPVLLYSFIEQTLQPGPAVSLKC 444
              ..||.:...:.::.|:|:|||...:|...:||..::                      :..|.
  Rat    76 DDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVK----------------------IFQKL 118

  Fly   445 SAAGNPTPQISWTLDGFPLPSNGRFMIGQYITVHGDVISHVNISHVMVEDGGEYACIAENRAGRV 509
            .....||||              .|..|:...:..||:|                          
  Rat   119 MFKNAPTPQ--------------EFKEGEDAVIVCDVVS-------------------------- 143

  Fly   510 QHAARLNIYGLPYIRLIPKVTAVSGETLNLKCPVAGYPIEEIHWERGGRE--LPDDIRQRVQPDG 572
                     .||                           ..|.|:..||:  |..|:|..|..:.
  Rat   144 ---------SLP---------------------------PTIIWKHKGRDVILKKDVRFIVLSNN 172

  Fly   573 SLTISPVQKNSDSGVYTCWAR-NKQGHSARRSGEVTVIVPPKLSPFQTNI-LQLNMGDRASLTCS 635
            .|.|..::| :|.|.|.|..| ..:|....:..:|.|.|||.:...|:.: ...|:|...:|.|.
  Rat   173 YLQIRGIKK-TDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCD 236

  Fly   636 VVKGDLPLTINWRKDGRPIDPTQHMSVKQV-DQYNSILVIENLGSDHTGNYSCVVRNSAAEVENS 699
             ..|....|::|.|||.||:..:....|.: ...:|.|.|.|:..:....|.|:..|.|.|.:.|
  Rat   237 -ADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDAS 300

  Fly   700 QALLVNVPPRWIVEPVDANVERNRHIMLHCQAQGVPTPSIVWKKATGSKSGEYEEVRERPFTKLL 764
            ..|.|...|:.........:|....:.|.|:|.|.|.|||.|:.:|.:.|.|.:....||..:..
  Rat   301 IHLKVFAKPKITYVENQTAMELEEQVTLTCEASGDPIPSITWRTSTRNISSEEKASWTRPEKQET 365

  Fly   765 GNG-----------SLLLQHVKEDREGFYLCQANNGIGTGIGKVIQLKVNSSPYFSSTSRSVMVK 818
            .:|           ||.|:.::....|.|:|.|:|.||.. .:.:.|:|..:|...... :|...
  Rat   366 LDGHMVVRSHARVSSLTLKSIQYTDAGEYICTASNTIGQD-SQSMYLEVQYAPKLQGPV-AVYTW 428

  Fly   819 KGDTALLQCAVSGDKPINIVWMRSGKNTLNPSTNYKISVKQEATPDGVSAELQIRTVDATDSGPY 883
            :|:...:.|.|.......|.|.|.|:  |.||:||. ::|...||.  ::.|::......|.|.|
  Rat   429 EGNQVNITCEVFAYPSATISWFRDGQ--LLPSSNYS-NIKIYNTPS--ASYLEVTPDSENDFGNY 488

  Fly   884 FCRASNLYGNDQQLVQLQVQEPPLPPSVLEAAMISSRSVNIKW-QPKTLGTGDVTKYIVEFR--- 944
            .|.|.|..|.:.....|...:.|..||:......|| :..::: :|:..|...:.||..|::   
  Rat   489 NCTAVNRIGQESLEFILVQADTPSSPSIDRVEPYSS-TAQVQFDEPEATGGVPILKYKAEWKSLG 552

  Fly   945 -EADHSLPPALFVDQWQQIEVKDPPHFN----AMIENLKPATRYAFRVIAEGSAGRSAPSQELIV 1004
             ||.||        :|.     |....|    ..|..|||.||||.|:.|....|....|.....
  Rat   553 EEAWHS--------KWY-----DAKEANMEGIVTIMGLKPETRYAVRLAALNGKGLGEISAATEF 604

  Fly  1005 RTEPQR---PAGPPLSLSARPLSSTELLISWVAPLPELRHGD------------------IQGYN 1048
            :|:|..   |.|.|                 .||..|.:.|:                  |:.|.
  Rat   605 KTQPVHSPPPQGEP-----------------SAPKLEGQMGEDGNSIKVNLIKQDDGGSPIRHYL 652

  Fly  1049 VGY--KLSSSGNTAYNFTSVSGDGDGGNGELLLSGLAKFARYTVVVQAFNQVGPGPL-------- 1103
            |.|  ||:|.........|       |:..::|..|...|.|.|.|.|.||.|....        
  Rat   653 VKYRAKLASEWKPEIRLPS-------GSDHVMLKSLDWNAEYEVYVVAENQQGKSKAAHFVFRTS 710

  Fly  1104 SEPTAAQTMEDVPSRPPE------------------------DV------RCAALSSQSLQVSWQ 1138
            ::|||      :|:....                        |:      :|..|...::.:..:
  Rat   711 AQPTA------IPANGSPTAGLSTGAIVGILIVIFVLLLVVMDITCYFLNKCGLLMCIAVNLCGK 769

  Fly  1139 PPPIYHTNGLLQGYKLIF------EPII-----DDIQPSKD---EVESRKTTALTMVLTGLRKYT 1189
            ..|......:.:| |..|      |||:     ::..|:.|   ..|..:||.||          
  Rat   770 AGPGAKGKDMEEG-KAAFSKDESKEPIVEVRTEEERTPNHDGGKHTEPNETTPLT---------- 823

  Fly  1190 NYSIQVLAHTRMGDGVVSKPLFCHSEEDVPEAPAD-----------IKVVSSSSQSLYISW-LPP 1242
                                        .||.|||           :..|:::|.::..:: ...
  Rat   824 ----------------------------EPELPADTTATVEDMLPSVTTVTTNSDTITETFATAQ 860

  Fly  1243 NEPNGVITKYSLYTRVVNGREELNNEKRSLPSQQAYYEAKGLHPHMEYQFWVTASTRVGEGKSSR 1307
            |.|....|   ..|..:........|..|:|:.|| ..:||          ||||:         
  Rat   861 NSPTSETT---TLTSSIAPPATTVPESNSVPAGQA-TPSKG----------VTASS--------- 902

  Fly  1308 VSSQITTNRIPARIISFGGPVVRPWRSTVTLPCTAVGKPKREWFKSDVALRQGGLHNSQLLDSGD 1372
             ||.      ||.:     |.|.|   .|.|..|....|......|.|...||.           
  Rat   903 -SSP------PASV-----PKVAP---LVDLSDTPTSAPSANNLSSTVLANQGA----------- 941

  Fly  1373 LIISSLQLADGGNYSCQVDNGIGTDRLTHTLIVQVPPT---APVLYVTSATSSSILMHWKCGFTG 1434
             ::|....|..|..|                  :||.|   :|....|.|.::|           
  Rat   942 -VLSPSTPASAGETS------------------KVPATSKPSPTPTPTPAGAAS----------- 976

  Fly  1435 NAPITGYTLFYRRANGNTDEMQLSRHASSHELKGLMCGSTYQIHLSAQNKVGTSPTSTILHVRTQ 1499
              |:...      |...|:..|..:.|.|  .|||             :...|.|.:    |:..
  Rat   977 --PLAAV------AAPATEAPQAKQEAPS--TKGL-------------DPEPTQPGT----VKNP 1014

  Fly  1500 GQSPGHPASTALLAPNSTSLLVRLHSWPDNGCPLLYFVLQYRAVTDDPDAEWVLVSNALKPQRRI 1564
            .::...|||....||:                                                 
  Rat  1015 TEAATAPASPKSKAPS------------------------------------------------- 1030

  Fly  1565 VINNLQPSTLYQLRMEAHNVAGISQAEFNFVT----LTKD-----GDPPPPEIMHRGRSGQTTVI 1620
             ::...||....|:|:          |.||.|    |.||     |.|.|.    .|.|||.:. 
  Rat  1031 -VSTTNPSQGEDLKMD----------EGNFKTPDIDLAKDVFAALGSPAPA----TGASGQASE- 1079

  Fly  1621 FANINLLIPTIAAVSGMFCTIIMIIVCYRHMLKNAPPLAEQSQIQKESLENRANSEAAQRE 1681
                  |.|:.|..:                :..||...|:..::.:|....:.::.|..|
  Rat  1080 ------LAPSTADSA----------------VPPAPAKTEKGPVETKSEPQESEAKPAPTE 1118

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam2NP_001261500.1 Ig 51..127 CDD:299845
Ig 138..>203 CDD:299845
I-set 238..327 CDD:254352 1/1 (100%)
Ig 247..327 CDD:299845 1/1 (100%)
I-set 332..418 CDD:254352 24/95 (25%)
IGc2 344..407 CDD:197706 17/72 (24%)
IG_like 432..517 CDD:214653 10/84 (12%)
IGc2 436..507 CDD:197706 10/70 (14%)
I-set 521..610 CDD:254352 20/91 (22%)
IGc2 533..597 CDD:197706 16/66 (24%)
Ig 630..699 CDD:143165 20/69 (29%)
IG_like 714..802 CDD:214653 27/98 (28%)
Ig 725..802 CDD:299845 26/87 (30%)
Ig 823..894 CDD:143165 22/70 (31%)
FN3 906..1006 CDD:238020 29/108 (27%)
FN3 1013..1111 CDD:238020 28/125 (22%)
FN3 1119..1209 CDD:238020 17/133 (13%)
FN3 1219..1313 CDD:238020 24/105 (23%)
Ig 1336..1402 CDD:143165 12/65 (18%)
FN3 1409..1498 CDD:238020 17/91 (19%)
FN3 1515..1588 CDD:238020 4/72 (6%)
Ncam1XP_038936733.1 IgI_1_NCAM-1 20..116 CDD:409451 24/120 (20%)
Ig strand B 37..41 CDD:409451 1/3 (33%)
Ig strand C 51..55 CDD:409451 1/3 (33%)
Ig strand E 79..83 CDD:409451 2/3 (67%)
Ig strand F 93..98 CDD:409451 2/4 (50%)
Ig strand G 107..110 CDD:409451 1/2 (50%)
IG_like 124..190 CDD:214653 25/142 (18%)
Ig strand B 135..139 CDD:409353 0/3 (0%)
Ig strand C 148..152 CDD:409353 1/3 (33%)
Ig strand E 172..176 CDD:409353 1/3 (33%)
Ig strand F 186..191 CDD:409353 2/4 (50%)
IgI_3_NCAM-1 211..308 CDD:143207 28/97 (29%)
Ig strand B 231..235 CDD:143207 1/3 (33%)
Ig strand C 244..248 CDD:143207 1/3 (33%)
Ig strand E 271..275 CDD:143207 2/3 (67%)
Ig strand F 285..290 CDD:143207 2/4 (50%)
Ig strand G 298..301 CDD:143207 0/2 (0%)
IgI_NCAM-1 307..413 CDD:143277 28/106 (26%)
Ig strand B 326..330 CDD:143277 1/3 (33%)
Ig strand C 339..343 CDD:143277 2/3 (67%)
Ig strand E 379..383 CDD:143277 2/3 (67%)
Ig strand F 393..398 CDD:143277 2/4 (50%)
Ig strand G 406..409 CDD:143277 0/2 (0%)
Ig_3 422..494 CDD:404760 22/77 (29%)
Ig strand B 433..437 CDD:409353 0/3 (0%)
Ig strand C 446..450 CDD:409353 1/3 (33%)
Ig strand E 473..477 CDD:409353 1/3 (33%)
Ig strand F 487..492 CDD:409353 2/4 (50%)
FN3 509..606 CDD:238020 29/110 (26%)
fn3 619..701 CDD:394996 23/88 (26%)
Herpes_BLLF1 <842..1133 CDD:282904 87/470 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.900

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