DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Dscam2 and Ptprq

DIOPT Version :9

Sequence 1:NP_001261500.1 Gene:Dscam2 / 38788 FlyBaseID:FBgn0265296 Length:2101 Species:Drosophila melanogaster
Sequence 2:NP_001357916.1 Gene:Ptprq / 237523 MGIID:1096349 Length:2301 Species:Mus musculus


Alignment Length:1934 Identity:388/1934 - (20%)
Similarity:676/1934 - (34%) Gaps:585/1934 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   374 QLPSSGRVEDTLVVPRVSRENRGMYQCVVRRPEGDTFQATAELQLGDAPPVLLYSFIEQTLQPGP 438
            |:..||..:||:....:|..:...|...|.|                       :......:|||
Mouse    18 QVDVSGSFDDTVYDITLSSISATTYSSPVSR-----------------------TLATNVSKPGP 59

  Fly   439 AVSLKCSAAGNPTPQISWTLDGFPLPSNGRFMIGQYITVHGDVISHVNISHVMVE---------- 493
            .|.|.....|:....:||..   |...|||.:  .|:..:.:|...:..::..|.          
Mouse    60 PVFLAGERVGSAGILLSWNT---PPNPNGRII--SYVVKYKEVCPWMQTAYTRVRAKPDSLEVLL 119

  Fly   494 ---DGG---EYACIAENRAGRVQHAARLNIYGLPYIRLIPKVTAVSGETLNLKCPVAGYPIEEIH 552
               :.|   |....|||.||       :.::..|:  |.....:..|:.:||......|....:.
Mouse   120 TNLNPGTTYEIKVAAENSAG-------IGVFSDPF--LFQTAESAPGKVVNLTVEALNYSAVNLI 175

  Fly   553 WERGGRELPDDIRQRVQPDGSLT-----------------------------ISPVQKNSDSGVY 588
            |     .||.      ||:|.:|                             :....:||||.::
Mouse   176 W-----YLPR------QPNGKITSFKISVKHARSGIVVKDVSIKVEDLLSGKLPECNENSDSFLW 229

  Fly   589 T----------------------CWARNKQGHSARRSGEVTVIVPPKLSPFQTNILQLN--MGDR 629
            :                      ..||||.....:   |....|...|.|:.|.:.:::  ..:.
Mouse   230 STTSPSPTLSRATPPLRTTHLSNTLARNKISSVWK---EPISFVVTHLRPYTTYLFEVSAVTTEA 291

  Fly   630 ASLTCSVVK---------------GDL---PLTINWRKDGRPIDPTQHMSVK---QVDQYNSI-L 672
            ..:..::|:               |::   ..:|:|       ||...::.|   :|:.|... .
Mouse   292 GYIDSTIVRTPESVPEGPPQNCITGNVTGKAFSISW-------DPPAIVTGKFSYRVELYGPTGR 349

  Fly   673 VIENLGSD------HTGNYSC----VVRNSAAEVENSQALLVNVPP--------RWIVEPVDANV 719
            :::|...|      |...::.    |...::|.|.....|.|..||        ..||| |:|..
Mouse   350 ILDNSTKDLRFVFTHLTPFTMYDVYVAAETSAGVGPKSNLSVFTPPDVPGAVFDLQIVE-VEATE 413

  Fly   720 ERNRHIMLHCQAQGVPTPSIVWKKATGSKSGEYEEVRERPFTKLLGNGSLL-------------- 770
            .|                 :.|:|.. ..:|...:.|.:  ..:|.:|.:|              
Mouse   414 IR-----------------VSWRKPR-QPNGIISQYRVK--VSVLESGVILENTLLTGQDEYINN 458

  Fly   771 -----LQHVKEDREGFYLCQANNGIGTGIGKVIQLKVNSSPY-FSSTSR------SVMVKKGDTA 823
                 :.::.:...|||  :.:..:.:.:..:.....||.|: |.:.:|      .|:|...:..
Mouse   459 PMTPEIMNLVDPMIGFY--EGSGEMSSDLHSLASFIYNSHPHDFPARTRVEDQRSPVVVATRNQY 521

  Fly   824 LLQCAVSGDKPINIVWMRSGKNTLNPSTNYKISVKQ-EATPDGVSAELQIRTVDATDSGPYFCRA 887
            :...|.   :.::.|..|     |.|.|.:.|||.. ....:|....|.:||             
Mouse   522 MTDIAA---EHLSYVIRR-----LVPFTEHTISVSAFTVMGEGPPTVLTVRT------------- 565

  Fly   888 SNLYGNDQQLVQLQVQEPPLPPSVLEAAMISSRSVNIKWQPKTLGTGDVTKYIVEFREADHSLPP 952
                   ::.|...:|       ::....|||.|:.:.|.|.....|.:|.|.:...|.|.:   
Mouse   566 -------REQVPSSIQ-------IINYKNISSSSILLYWDPPEYPNGKITHYTIYAMELDTN--- 613

  Fly   953 ALFVDQWQQIEVKDPPHFNAMIENLKPATRYAFRVIAEGSAGRSAPSQE--LIVRTEPQRPAGPP 1015
                ..:|...|.:    :.:|..||..|||..||.|....|.|:.|:|  |.|||....|...|
Mouse   614 ----RAFQMTTVDN----SFLITGLKKYTRYKMRVAASTHVGESSLSEENDLFVRTPEDEPESSP 670

  Fly  1016 LSLSARPLSSTELLISWVAPLPELRHGDIQGYNVGYK----LSSSGNTAYNFTSVSGDGDGGNGE 1076
            ..:....:|.:||.::| :| ||..:|.|..|.|.|:    |.....:..|.|            
Mouse   671 QDVKVTDVSPSELSLTW-SP-PEKPNGIIIAYEVFYQNADALFVKNTSTTNIT------------ 721

  Fly  1077 LLLSGLAKFARYTVVVQAFNQVGPGPLSEP-TAAQTMEDVPSRPPEDVRCAALSSQSLQVSWQPP 1140
              ||.|..:..|.:.:|::.::|.|..|.. .:.:|.|.||...||::....:||:.:::.:.||
Mouse   722 --LSDLKPYTLYNISIQSYTRLGHGNQSSSLLSVRTSETVPDSAPENITYKNISSEEIEIFFLPP 784

  Fly  1141 PIYHTNGLLQGYKLIFEPIIDDIQPSKDEVESRKTTALTMVLTGLRKYTNYSIQVLAHTRMGDGV 1205
              ...||::|.|.:..:      :.:..|..:.:||:||:.:.||:|||:|.|:|.|.|..|:||
Mouse   785 --RSPNGIIQKYTIYLK------RSNSHEARTIETTSLTLTIGGLKKYTHYVIEVSASTLKGEGV 841

  Fly  1206 VSKPLFCHSEEDVPEA-PADIKVVSSSSQSLYISWLPPNEPNGVITKYSLYTRVVNGREELNNEK 1269
            .|.|:...:|||.|:: |.:..|...|..::.:||.||.||||:|..|::|.......:.:|..:
Mouse   842 RSMPISILTEEDAPDSPPQNFSVKQLSGVTVMLSWQPPLEPNGIILYYTVYVWDKVSLKTINATE 906

  Fly  1270 RSLPSQQAYYEAKGLHPHMEYQFWVTASTRVGEGKSSRVSSQITTNRIP---------------- 1318
            .||       |...|..|.:|..:||||||.|:||:   .|.:...|.|                
Mouse   907 VSL-------ELSDLDYHADYSAYVTASTRFGDGKT---RSSVINFRTPEGEPSDPPKDVHYVNL 961

  Fly  1319 --ARIISFGGPVVRP----------WRSTVTLPCTAVGKPKREWFKSDVALRQGGLHNSQLLDSG 1371
              :.||.|..|.|:|          :::|.:.            |..:..|    |..:|  :.|
Mouse   962 SSSSIILFWTPPVKPNGIIQYYSVYYQNTSST------------FVQNFTL----LEVTQ--EPG 1008

  Fly  1372 DLIISS--LQLADGGNY------SCQVDNGIGTDRLTHTLIVQVPPTAPV--LYVTSATSSSILM 1426
            ::.:|:  .:||....|      |..|.||..:..:.|....|..|...|  |...|.:|::|.:
Mouse  1009 NVTVSARIYKLAVFSYYTFWLTASTLVGNGNKSSDVIHVYTDQDIPEGGVGNLTYESLSSTAINV 1073

  Fly  1427 HWKCGFTGNAPITGYTLFYRRANGNTDEMQ-----LSRHASSHELKGLMCGSTYQIHLSAQNKVG 1486
            .|    |..:...|...:|...|......:     |:.:.:|.....|...:.|...::...:.|
Mouse  1074 SW----TPPSQPNGLVFYYVSLNLQQSPPRHRRPPLTTYENSIYFDNLEKYTDYIFKITPSTEKG 1134

  Fly  1487 TSPTSTI-LHVRTQGQSPGHPASTALLAP--------NSTSLLVRLHSW----PDNGCPLLYFVL 1538
            .|.|.|. ||::|:...|..|       |        :|||:|:   ||    ..||.     :|
Mouse  1135 FSETYTAQLHIKTEEDVPDTP-------PIINTFKNLSSTSILL---SWDPPLKPNGA-----IL 1184

  Fly  1539 QYRAVTDDPDAEWVLVSNALKPQRRIVINNLQPSTLYQLRMEAHNVAGISQAEF----------- 1592
            .|........|....|::.    ..||:..|.|.|||.....|..:.|:..:..           
Mouse  1185 SYHLTLQGTHANRTFVTSG----NHIVLEELSPFTLYSFLAAARTMKGLGPSSILFFYTDESAPL 1245

  Fly  1593 -------------NFVTLTKDGDPPPPEI-------MHRGRSGQTTVIFANINLLIPTIAAVSGM 1637
                         :||.||....|.|..|       :|...:  .||.:.||: ...|.|.::|:
Mouse  1246 APPQNLTLINYTSDFVWLTWSPSPLPGGIVKVYSFKIHEHET--DTVFYKNIS-GFQTDAKLAGL 1307

  Fly  1638 FCTIIMIIVCYRHMLKNAPPLAEQSQIQKESLENRANSEAAQRERYYATIHKVSMQNNDKIPETS 1702
                              .|::..| |...:.....|.      ..::.:.|.:.|  :.:|:..
Mouse  1308 ------------------EPVSTYS-ISVSAFTKVGNG------NQFSNVVKFTTQ--ESVPDAV 1345

  Fly  1703 EDISPYA--------------------TFQLSEAGGNMSQPHHGGP--------ANTLLHSFMYH 1739
            ::|:..|                    ...:....||.::.....|        |||   |:::.
Mouse  1346 QNIACVARDWQSVSVMWDPPRKANGIIIHYMITVEGNSTKVSPRDPMYTFTKLLANT---SYIFE 1407

  Fly  1740 ERA---LAEG----C----------SSPPPAASKNRRRHS---RKTEPESEESESDQDQLTSS-R 1783
            .||   ..||    |          |.|...|..|.:..|   |..:|::........::|:. |
Mouse  1408 VRASTSAGEGNESQCNVSTLPETVPSVPTNTAFSNVQSTSVTLRWIKPDTILGYFQNYKITTQLR 1472

  Fly  1784 TESSNQHEGK--IKHSIIYHGAQSSTSSDLSPMSEQKSLPRRGRSRYHHQQYQFSTNTTPRHHNS 1846
            .:...:.|.:  ::|..:.:..:::.:.|..          ||..::...::|.:.:|...:.|:
Mouse  1473 AQKCREWEPEECVEHQEVQYLYEANQTEDTV----------RGLKKFQWYRFQVAASTNAGYGNA 1527

  Fly  1847 NKMNNNTT---------SNTNTTATNTTATPSTSSNSNKILSPRGGNLKSISSTFKSQDSIQCHI 1902
            :...:..|         .|....||                ||.|.|             |..:.
Mouse  1528 SSWISTQTLPGPPDGPPENVRVVAT----------------SPFGIN-------------ISWNE 1563

  Fly  1903 PTLVKSPSISTQQQKQFHKQQLQNSST-NNSQHSSSNPNSSSLKQQQPLLITPKLHQLE---ANG 1963
            |.::..|:......|.........|.. :|.::.::..|...:..:..::||..:..:.   .:|
Mouse  1564 PAIITGPTFYLIDVKSVDNDNFNISFVKSNEENKTTEINDLEVFTRYSVVITAFVGNVSGAYTDG 1628

  Fly  1964 QE-----LLGLDGIGNSPLVACMPPSSQFRPIPHK------SIMPAHEP 2001
            :.     :..|:.:...|     |.:..|:.||.:      |.:|..:|
Mouse  1629 KSSAEVIITTLESVPKDP-----PNNMTFQKIPDEVTKFQLSFLPPSQP 1672

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam2NP_001261500.1 Ig 51..127 CDD:299845
Ig 138..>203 CDD:299845
I-set 238..327 CDD:254352
Ig 247..327 CDD:299845
I-set 332..418 CDD:254352 9/43 (21%)
IGc2 344..407 CDD:197706 9/32 (28%)
IG_like 432..517 CDD:214653 22/100 (22%)
IGc2 436..507 CDD:197706 20/86 (23%)
I-set 521..610 CDD:254352 22/139 (16%)
IGc2 533..597 CDD:197706 19/114 (17%)
Ig 630..699 CDD:143165 15/100 (15%)
IG_like 714..802 CDD:214653 13/106 (12%)
Ig 725..802 CDD:299845 10/95 (11%)
Ig 823..894 CDD:143165 13/71 (18%)
FN3 906..1006 CDD:238020 28/101 (28%)
FN3 1013..1111 CDD:238020 24/102 (24%)
FN3 1119..1209 CDD:238020 29/89 (33%)
FN3 1219..1313 CDD:238020 32/94 (34%)
Ig 1336..1402 CDD:143165 13/73 (18%)
FN3 1409..1498 CDD:238020 21/96 (22%)
FN3 1515..1588 CDD:238020 21/76 (28%)
PtprqNP_001357916.1 FN3 57..151 CDD:238020 24/107 (22%)
FN3 308..393 CDD:238020 16/91 (18%)
fn3 399..>441 CDD:365830 11/62 (18%)
FN3 570..654 CDD:238020 26/101 (26%)
fn3 668..744 CDD:365830 22/91 (24%)
FN3 762..850 CDD:238020 30/95 (32%)
fn3 857..934 CDD:365830 28/83 (34%)
FN3 951..1049 CDD:238020 21/115 (18%)
FN3 1056..1137 CDD:238020 15/84 (18%)
FN3 1152..1233 CDD:238020 24/99 (24%)
FN3 1247..1337 CDD:238020 20/117 (17%)
FN3 1342..1421 CDD:238020 14/81 (17%)
FN3 1432..1535 CDD:238020 17/112 (15%)
FN3 1542..1638 CDD:238020 17/124 (14%)
FN3 1645..1734 CDD:238020 8/33 (24%)
UP_III_II 1759..1928 CDD:297589
R-PTPc-Q 2033..2256 CDD:350464
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.900

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