DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Dscam2 and rig-4

DIOPT Version :9

Sequence 1:NP_001261500.1 Gene:Dscam2 / 38788 FlyBaseID:FBgn0265296 Length:2101 Species:Drosophila melanogaster
Sequence 2:NP_501339.2 Gene:rig-4 / 177597 WormBaseID:WBGene00004371 Length:2325 Species:Caenorhabditis elegans


Alignment Length:1787 Identity:391/1787 - (21%)
Similarity:661/1787 - (36%) Gaps:393/1787 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   249 VSQDEGAVLLCVA-QG------CPSPE----YSWFTHNGAGPLPVLSGPRVRLLGPILAIEAVTG 302
            :.||.|:|...|| :|      |...|    |.|...:.:|.|...|        ....::|...
 Worm    30 IFQDGGSVEQKVAVEGEIIRLKCDDAELAEQYEWRIGDASGELIATS--------KFCEVQASRV 86

  Fly   303 EDSGVYKCTAGNVGGEASAELRLTVATP-----------------IQVEISPNVLSVHMGGTAEF 350
            .|...|:|.|.|..|.|       ::.|                 :|.|::          |...
 Worm    87 NDEKKYRCVARNTVGAA-------ISPPSMVRSKYLDDFDASDESVQYEVT----------TGVG 134

  Fly   351 RCLVTSNGSPVGMQNI----LWYKDGRQ---------LPSSGRVEDTLVVPRVSRENRGMYQCVV 402
            |..|....:.:..:|:    .|.||...         :.|.|    .|||..|.|::.|.|:.:.
 Worm   135 RYFVLRRPTLLASRNLDISYSWIKDDSHQVTPDATHFVTSDG----NLVVTGVKRDDFGAYKLMA 195

  Fly   403 RRPEGDTFQ--ATAELQLGD---APPV-----LLY-----SFIEQTLQPGPAVSLKCSAAGNPTP 452
               ..|..:  .:.|..:.|   :|.:     ::|     :.||.||..........|.......
 Worm   196 ---SSDDLKEIVSKEYNVRDNGLSPSLQNTLSIVYFPTDRTIIESTLPHDEIFDCVTSFGSKDDV 257

  Fly   453 QISWTLDGFPLPSNGRFMIGQYITVHGDVISHVNISHVMVEDGGEY--ACIAENRAGRV--QHAA 513
            :|.|.|:|..:..:   .:|...|::.   ..:.||:......||:  .|.|:...||.  |.:|
 Worm   258 RIRWFLNGQQISGS---EVGMTTTLNN---RRLIISNPSSFTRGEHKLECRADAAMGRTSDQKSA 316

  Fly   514 RLNIYGLPYIRLIP-KVTAVSGETLNLKCPVAGYPIEEIHWERGGRELPDDIRQRVQPDGSLTIS 577
            .:.....|.::.:| ::....|.:|:|||.|......:|.|.:.|..:   ..||    |.|||.
 Worm   317 YMTFISRPILKDLPNEIQKTVGSSLSLKCSVKKKSSMDIKWYKNGLMM---TTQR----GKLTID 374

  Fly   578 PVQKNSDSGVYTCWARNKQGHSAR----RSGEVTVIVPPKLSPFQTNILQLNMGDRASLTCSVVK 638
            .: |..|.|:|.|.|.|..|....    :.||....|..::|                       
 Worm   375 RI-KQDDFGLYQCEATNAAGADLASVWVKEGEANETVATEMS----------------------- 415

  Fly   639 GDLPLTINWRKDGRPIDPTQHMSVKQVDQYNSILVIENLGSDHTGNYSCVVRNSAAEVENSQALL 703
                      :||..::....|   :......:...:|..|...      :....:|:|.||.| 
 Worm   416 ----------EDGMSLEEEISM---ETPPPRKLKFFDNSKSQEQ------LFPFTSELEPSQKL- 460

  Fly   704 VNVPPRWIVEPVDANVERNR-HIMLHCQAQGVPTPSIVWKKATGSKSGEYEEVRERPFTKLLGNG 767
                   |..|.|..|.... .||:.|.|.|.|.|:|:|     ..:|  .|::.......|.|.
 Worm   461 -------IKTPKDLTVASGTDRIMMECAATGSPPPNIIW-----LLNG--HEIQTDNVKYDLTND 511

  Fly   768 SLLLQHVKEDREGFYLCQANNGIGTGIGKVIQLKVNSS---PYFSSTSRSVMVKKGDTALLQCAV 829
            .|.:..:::..||.|.|:.:   |:.:.....::||..   .|..:..:|::   |......|.|
 Worm   512 GLAIHDIRKSDEGEYTCEIS---GSNVKATANVQVNGDSLIEYGPADQKSLI---GTNVEFSCEV 570

  Fly   830 SGD--KPINIVWMR-------SGKNTLNPSTNYKISVKQEATPDGVSAELQIRTVDATDSGPYFC 885
            :.:  :..::.|..       :|.:.|..|.|.|             ..|.||.|...::|.|.|
 Worm   571 AKEYVRKASVEWYLNDVLLPVNGNSGLRISRNRK-------------GSLIIRQVGPDNTGEYRC 622

  Fly   886 RASNLYGNDQQLVQLQVQEPPLPPSVLEAAMISS---RSVNIKWQPKTLGTGDVTKYIVEFREAD 947
            |.:.....:.....||:.|.|..|..:.|.:.:.   ..|.::|.....|...:.|:.:|.|...
 Worm   623 RVTVDGREENASAMLQIIEKPAMPERVRAELHNETMPAKVRVRWNEGFDGNEPIIKHAIEMRTMG 687

  Fly   948 HSLPPALFVDQWQQIE----VKDPPHFNAMIENLKPATRYAFRVIAEGSAGRSAPSQELIVRTEP 1008
               |..|:.|....|:    .:..|.....||:|:|::...|||:|....|...||......|.|
 Worm   688 ---PTGLWSDWTTAIDNIPKEEGKPCCWTDIEDLRPSSTAEFRVVASNKHGPGKPSLPSYSVTMP 749

  Fly  1009 QR-PAGPPLSLSARPLSSTELLISWVAPLPELRHGDIQGYNVGYKLSSSGNTAYNFTSVSGDGDG 1072
            |: |:..|.:::|...|...:::.|..|..||..||:.||.|.|:|:...:..:|..::: ..|.
 Worm   750 QQPPSAAPRNVAASARSPHSVMVQWQQPKEELDSGDVLGYVVRYRLAGYSSLTWNEKNLT-TKDA 813

  Fly  1073 GNGELLLSGLAKFARYTVVVQAFNQVGPGPLSEPTAAQTMEDVPSRPPEDVRCAALSSQSLQVSW 1137
            .|  .|:..|..:..|.:.|.|:|:.|.|..||.....|.|..|::.|::||...|:|.::.:.:
 Worm   814 RN--TLVDELITWREYEIQVAAYNKRGLGVFSESIEVTTSEGRPTQAPKNVRVKVLNSTAVAIEF 876

  Fly  1138 QPPPIYHTNGLLQGYKLIF---EPIIDDIQPSKDEVESRKTTALTMVLTGLRKYTNYSIQVLAHT 1199
            ..|......|:..|||:.|   ||...::.  |..:.......||.|:..|.|:.:|::..|..|
 Worm   877 TAPEQQRIPGVNLGYKVQFWKGEPEKGELY--KQVILDPDRRQLTTVVNELEKFGHYNLTTLCFT 939

  Fly  1200 RMGDGVVSKPLFCHSEEDVPEAPADIKVVSSSSQSLYISWLPPNEPNGVITKYSLYTRVVNGREE 1264
            ..|||..|..:...:|||.||:..::.:.........|:|..|.:.||::|||::.....:..:.
 Worm   940 TPGDGPRSNVVKVVTEEDTPESVDELSIAEVMYNGAVITWNSPLKQNGIVTKYTIRHWAASSPDV 1004

  Fly  1265 LNNEKRSLPSQQAYYEAKGLHPHMEYQFWVTASTRVGEG--KSSRVSSQITTNRIPAR--IISFG 1325
              ..|..:......:...||.|...|...|.||||.|:|  :.::..|.:.. .:|.|  ::|.|
 Worm  1005 --KTKHEVDGSTTNFTIDGLQPSTRYGVDVMASTRKGDGPVEETKFESGVPP-ELPGRPSMLSIG 1066

  Fly  1326 GPVVRPWRSTVTLPCTAVGKPKREWFKSDVALRQ----GGLHNSQLL---------DSGDLIISS 1377
                       .:..|.|.......|....|:||    |.:.:|.:.         .:..:.::.
 Worm  1067 -----------DISATTVQLHFTPGFDGHTAIRQWVVEGKMADSSVFAHVFNVSAPKARSITVTG 1120

  Fly  1378 LQLADGGNYSCQVDN--GIGT----DRLTHTLIVQVPPTAPV--LYV--TSATSSSI------LM 1426
            |:...........:|  |.|.    .|...||  |..|..|.  |:.  .||||.|:      ..
 Worm  1121 LRPFTQYQLRLIAENVKGRGAPSEPSRSFETL--QTNPDTPSQRLFAEPVSATSISVSWTPLLAT 1183

  Fly  1427 HWKCGFTGNAPITGYTLFYRRANG-NTDEMQL-SRHASSHELKGLMCGSTYQIHLSAQNKVGTS- 1488
            ||      |....||.:.||..:. |..|::. :..:|.|.:..|...::|::::.::|..|.| 
 Worm  1184 HW------NGQPKGYLIVYREIDDENWKEVRTPALRSSEHTVTDLRPFTSYEVNVFSENGFGRSL 1242

  Fly  1489 PTSTILHVRTQGQSP-GHPASTALLAPNSTSLLVRLHSW------PDNGCPLLYFVLQYRAVTDD 1546
            ||.:: ..||....| |.|.:..:.|..|.:.:::   |      ..||..:.|   :.|.|   
 Worm  1243 PTDSV-KARTYESVPSGSPRNIVVTAEGSKAAIIK---WNPVAELSTNGDVIGY---KLRVV--- 1297

  Fly  1547 PDAEWVLVSNA----LKPQRRIV--INNLQPSTLYQLRMEAHNVAG---ISQAEFNFVTLTKDGD 1602
            |:.|.::....    :..|..::  :::|:|.|.|.:.|.|:.:.|   .:....:|.|:  :..
 Worm  1298 PERESLMADETKVIDIPGQSTLMAKVSDLRPFTSYHVYMSAYTIVGNGPENSTPISFETM--EDV 1360

  Fly  1603 PPPPEIMHRGRSGQTTVIFANINLLIPTIAAVSGMFCTIIMIIVCY------RHMLKNAPPLAEQ 1661
            |.|||........:..|   .:..|.|  .:.:|   .|...|:.|      |.|..:||.|...
 Worm  1361 PAPPESFQCSYISEQEV---RMKWLPP--GSPNG---KITNYIISYWKSHEPRSMAIDAPLLGNL 1417

  Fly  1662 SQIQKESLENRANSEAAQRERYYATIHKVSMQNNDKIPETSEDISPYATFQLSEAGGNMSQPHHG 1726
            ......||........|.:.|            |.| .|:.|.::...|       .::..|...
 Worm  1418 LMFAAMSLNPNTQYTFAIKAR------------NSK-GESEEAVAEVMT-------SSVRLPVRN 1462

  Fly  1727 GPANTLLHSFMYHE-------------RALAEGCSSPPPAASKNRRRHSRKTEPESEESESDQDQ 1778
            .|| .:..:...|:             |.|.|...||..|..            .|.:..::.:.
 Worm  1463 APA-PVRDTLSQHQATEIIIRWDESLPRKLTEDAESPVRAVQ------------VSYQKTNEDEW 1514

  Fly  1779 LTSSRTESSNQHEGKIKHSIIYHGAQSS------------TSSDLSPMSE-QKSLPRRGRSRYHH 1830
            :|..:     :.|...:.|:|.|.:.:|            ..|..||.|| .::||....::   
 Worm  1515 ITLEK-----KFEYSKRRSVIKHLSPNSMFRFRIRFIGDFLESSWSPESEWMRTLPSAPFAQ--- 1571

  Fly  1831 QQYQFSTNTTPRHHNSNKMN----NNTTSNTN 1858
               ..|...||...||.::.    :.:|.|::
 Worm  1572 ---PISLKATPYERNSVQLEWVVPHKSTWNSD 1600

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam2NP_001261500.1 Ig 51..127 CDD:299845
Ig 138..>203 CDD:299845
I-set 238..327 CDD:254352 22/88 (25%)
Ig 247..327 CDD:299845 22/88 (25%)
I-set 332..418 CDD:254352 20/100 (20%)
IGc2 344..407 CDD:197706 16/75 (21%)
IG_like 432..517 CDD:214653 19/88 (22%)
IGc2 436..507 CDD:197706 13/72 (18%)
I-set 521..610 CDD:254352 27/93 (29%)
IGc2 533..597 CDD:197706 22/63 (35%)
Ig 630..699 CDD:143165 7/68 (10%)
IG_like 714..802 CDD:214653 22/88 (25%)
Ig 725..802 CDD:299845 19/76 (25%)
Ig 823..894 CDD:143165 16/79 (20%)
FN3 906..1006 CDD:238020 25/106 (24%)
FN3 1013..1111 CDD:238020 27/97 (28%)
FN3 1119..1209 CDD:238020 26/92 (28%)
FN3 1219..1313 CDD:238020 23/95 (24%)
Ig 1336..1402 CDD:143165 13/84 (15%)
FN3 1409..1498 CDD:238020 26/101 (26%)
FN3 1515..1588 CDD:238020 17/87 (20%)
rig-4NP_501339.2 IG_like 330..402 CDD:214653 24/79 (30%)
IGc2 338..393 CDD:197706 22/62 (35%)
I-set 459..543 CDD:254352 24/101 (24%)
IGc2 478..534 CDD:197706 17/65 (26%)
IG_like 553..639 CDD:214653 19/101 (19%)
Ig 564..635 CDD:143165 16/83 (19%)
FN3 643..747 CDD:238020 25/106 (24%)
FN3 756..850 CDD:238020 27/96 (28%)
FN3 858..954 CDD:238020 26/97 (27%)
FN3 959..1042 CDD:238020 21/84 (25%)
FN3 1057..1151 CDD:238020 17/104 (16%)
FN3 1156..1251 CDD:238020 26/101 (26%)
FN3 1258..1356 CDD:238020 21/106 (20%)
FN3 1361..1453 CDD:238020 24/112 (21%)
FN3 1464..1560 CDD:238020 20/113 (18%)
FN3 1572..1664 CDD:238020 7/29 (24%)
FN3 1679..1764 CDD:238020
FN3 1774..1858 CDD:238020
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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