DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dscam2 and cntn3a.2

DIOPT Version :10

Sequence 1:NP_001261500.1 Gene:Dscam2 / 38788 FlyBaseID:FBgn0265296 Length:2101 Species:Drosophila melanogaster
Sequence 2:XP_001340839.6 Gene:cntn3a.2 / 100000688 ZFINID:ZDB-GENE-090312-57 Length:1023 Species:Danio rerio


Alignment Length:1155 Identity:286/1155 - (24%)
Similarity:452/1155 - (39%) Gaps:255/1155 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   250 SQDEGAVLLCVAQGCPSPEYSWFTHNGAGPLPVLS-GPRVRLLGPILAIEAV-TGEDSGVYKCTA 312
            |.:|.|.|.|.|:|.|:|:|.|..:   |.|..|| ..|.||.|..|.|.:: ..:|.|:|:|||
Zfish    42 SLEEEATLACDAKGIPAPQYRWSLN---GTLINLSTDSRRRLSGGNLVIRSLDRAQDGGIYQCTA 103

  Fly   313 GNVGG-----EAS---AELRLTVATPIQVEISPNVLSVHMGGTAEFRCLVTSNGSP--VGMQNIL 367
            .|..|     .||   |.|.|...|       .:.:||..|......|     |:|  .|..:..
Zfish   104 FNPHGAILSRRASLQFAYLNLKTQT-------RSAVSVREGQGVVLLC-----GTPSYAGDLSFA 156

  Fly   368 W---------YKDGRQLPSSGRVEDT--LVVPRVSRENRGMYQCVV--RRPEGDTFQATAELQL- 418
            |         .:|.|:..|    ::|  |.:.:|...:.|.|.|||  |..:|....:...|.| 
Zfish   157 WVFNEYPYFVQQDNRRFVS----QETGNLYIAKVEPSDVGNYTCVVVNRITKGKVLSSPTPLVLR 217

  Fly   419 -----GDAPPVLLYSFIEQT-LQPGPAVSLKCSAAGNPTPQISW-TLDGFPLPSNGRFMIGQYIT 476
                 |:..|.:...|.:.. ...|..|:|:|.|.|||.|:|:| ..:..|.||..:..      
Zfish   218 TDGVMGEYEPKIEVHFSDMVPAAKGSVVTLECFALGNPVPEITWRRANAVPFPSKVKMK------ 276

  Fly   477 VHGDVISHVNISHVMVEDGGEYACIAENRAGRVQHAARLNIYGLP-YIRLIPKVTAVSGETLNLK 540
             :.:|:  :.|.....||.|.|.|:|||:.|:.....||:.:..| :::.:..:.....|.|..:
Zfish   277 -NSNVV--LEIPSFQQEDAGGYECVAENKMGKNTVQGRLSFHAKPQWVQTMRDIALSIEERLFWE 338

  Fly   541 CPVAGYPIEEIHWERGGRELPDDIRQRVQPDGSLTISPVQKNSDSGVYTCWARNKQGHSARRSGE 605
            |...|.|.....|.:.|..|..:.|.::: :|:||||.|.. ||:|:|.|.|.||.|.....:..
Zfish   339 CKANGKPKPSYSWLKNGELLAAEDRIQIE-NGALTISSVNL-SDAGMYQCVAENKHGIIYFGAEL 401

  Fly   606 VTVIVPPKL--SPFQTNILQLNMGDRASLTCSVVKGDLPLTINWRKDGRPIDPTQHMSVKQVDQY 668
            |.:..||..  ||.:| :|:...|...::.|........:|: |||....:..|..::...    
Zfish   402 VVLASPPDFSRSPLRT-LLKAKTGSTVTMECKPQAFPSAITL-WRKGNEVMQRTDRITFLP---- 460

  Fly   669 NSILVIENLGSDHTGNYSCVVRNSAAEVENSQALLVNVPPRWIVEPVDANVERNRHIMLHCQAQG 733
            :..|.:.|:.....|||:|:.||.......|..|||..|.:....|||..:.....|:|.||...
Zfish   461 DGTLRLTNVTKMDGGNYACLARNQFGTASTSGRLLVTDPTQITQGPVDMEIIVGESIVLPCQISC 525

  Fly   734 VPTPSIVWKKATGSK-----SGEYEEVRERPFTKLLGNGSLLLQHVKEDREGFYLCQANNGIGTG 793
            .|...:.:..|...:     ...||.|....      :|.|::::::....|.|:|         
Zfish   526 DPALDVSFSWAFNGQLLSKLDQHYEHVGGST------SGDLMIRNIQLKHAGKYVC--------- 575

  Fly   794 IGKVIQLKVNSSPYFSSTSRSVMVKKGDTALLQCAVSGDKPINIVWMRSGKNTLNPSTNYKISVK 858
               |:...|.     |.::.::::.||                                      
Zfish   576 ---VVDTDVE-----SLSAAAILIVKG-------------------------------------- 594

  Fly   859 QEATPDGVSAELQIRTVDATDSGPYFCRASNLYGNDQQLVQLQVQEPPLPPSVLEAAMISSRSVN 923
            ....||||:.|      :.|||                                        :..
Zfish   595 PPGAPDGVTVE------EITDS----------------------------------------TAQ 613

  Fly   924 IKWQPKTLGTGDVTKYIVEFREADHSLPPALFVDQWQQI----EVKDPPHFNAMIENLKPATRYA 984
            :.|:|.......:|.||::.:.|        |...||.:    ||.|.....|.:.:|.....:.
Zfish   614 LSWRPGQDNGSPITSYIIQAKTA--------FTVGWQAVNTVPEVIDGNTLTATVVDLNAWVEFE 670

  Fly   985 FRVIAEGSAGRSAPS-QELIVRTEPQRPAGPPLSLSARPLSSTELLISWVAPLPE-LRHGDIQGY 1047
            |||:|..|.|...|| ..|..|||...|...|..:.....|.:||:|:| .|:|| |::||..||
Zfish   671 FRVLARNSVGVGEPSPASLKTRTEDAVPDTAPTDVGGGGGSKSELVITW-EPVPEDLQNGDGFGY 734

  Fly  1048 NVGYKLSSSGNTAYNFTSVSGDGD--GGNGELLLSGLAKFARYTVVVQAFNQVGPGPLSEPTAAQ 1110
            .:.::.....|..:..|||.....  ..|..:|     .|:.::|.|.|:|..|.||.|..|...
Zfish   735 IIAFRPLGEVNWTHAVTSVPTQSRYVYRNESIL-----PFSPFSVKVGAYNTKGQGPFSPVTIVF 794

  Fly  1111 TMEDVPSRPPEDVRCAALSSQSLQVSWQPPPIYHTNGLLQGYKLIFEPIIDDIQP---------- 1165
            :.|:.||..|:.|...::|:..::|||....: .|..:| ||::::..  ||.:|          
Zfish   795 SAENEPSGVPDGVWARSISATEIEVSWHILSV-STERVL-GYEVVYWE--DDTKPETMGKVRVSA 855

  Fly  1166 SKDEVESRKTTALTMVLTGLRKYTNYSIQVLAHTRMGDGVVSKPLFCHSEEDVPEAP---ADIKV 1227
            ::|:|.          ::|||.||.|.:.|.|....|.|.:|..:...:::..|..|   .:..:
Zfish   856 NQDKVN----------ISGLRGYTQYFLTVSAFNTAGTGPLSPTINVTTKKSPPGQPPLNVEWNL 910

  Fly  1228 VSSSSQSLYISWLP--PNEPNGVITKYSL-YTRVVNGREELNNEKRSLPSQQAYYEAKGLHPHME 1289
            :.|   .|.:.|.|  ..|....:|.|.: |.|  |..:|:|....:|.|.:....|..     :
Zfish   911 IGS---KLTVHWEPVISLEMESDVTGYQVSYRR--NRHKEINTITTNLTSVELTLPADD-----D 965

  Fly  1290 YQFWVTASTRVGEGKSSRVSSQITTNRIPARIISFGGPVVRPWRSTVTLP 1339
            |...:.|.:..|||        :.|..|....:|......|.||.. |:|
Zfish   966 YVIQIRALSDGGEG--------MPTEPINIHKLSMSVRGSRAWRPN-TIP 1006

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam2NP_001261500.1 Ig 30..128 CDD:472250
Ig strand B 49..53 CDD:409353
Ig strand C 62..66 CDD:409353
Ig strand E 86..90 CDD:409353
Ig strand F 106..111 CDD:409353
Ig strand G 119..123 CDD:409353
V-set 138..229 CDD:462230
Ig 238..327 CDD:472250 34/86 (40%)
Ig strand B 255..259 CDD:409353 2/3 (67%)
Ig strand C 268..272 CDD:409353 1/3 (33%)
Ig strand E 293..297 CDD:409353 1/3 (33%)
Ig strand F 307..312 CDD:409353 2/4 (50%)
Ig strand G 320..323 CDD:409353 2/5 (40%)
Ig 330..418 CDD:472250 22/102 (22%)
Ig strand B 348..352 CDD:409353 0/3 (0%)
Ig strand C 365..369 CDD:409353 1/12 (8%)
Ig strand E 383..387 CDD:409353 2/5 (40%)
Ig strand F 397..402 CDD:409353 2/4 (50%)
Ig strand G 411..414 CDD:409353 0/2 (0%)
IgI_4_Dscam 422..517 CDD:409548 29/96 (30%)
Ig strand A 422..425 CDD:409548 1/2 (50%)
Ig strand A' 431..435 CDD:409548 0/4 (0%)
Ig strand B 438..447 CDD:409548 3/8 (38%)
Ig strand C 452..458 CDD:409548 3/6 (50%)
Ig strand C' 460..463 CDD:409548 0/2 (0%)
Ig strand D 468..476 CDD:409548 0/7 (0%)
Ig strand E 480..489 CDD:409548 2/8 (25%)
Ig strand F 496..504 CDD:409548 4/7 (57%)
Ig strand G 507..517 CDD:409548 3/9 (33%)
IgI_5_Dscam 521..608 CDD:409550 26/87 (30%)
Ig strand A 521..523 CDD:409550 1/2 (50%)
Ig strand A' 528..532 CDD:409550 0/3 (0%)
Ig strand B 535..542 CDD:409550 2/6 (33%)
Ig strand C 549..555 CDD:409550 1/5 (20%)
Ig strand C' 556..558 CDD:409550 0/1 (0%)
Ig strand D 565..569 CDD:409550 1/3 (33%)
Ig strand E 572..578 CDD:409550 4/5 (80%)
Ig strand F 586..594 CDD:409550 4/7 (57%)
Ig strand G 598..608 CDD:409550 1/9 (11%)
Ig 611..704 CDD:472250 23/94 (24%)
Ig strand B 630..634 CDD:409353 0/3 (0%)
Ig strand C 644..648 CDD:409353 1/3 (33%)
Ig strand E 670..674 CDD:409353 1/3 (33%)
Ig strand F 684..689 CDD:409353 3/4 (75%)
Ig strand G 697..700 CDD:409353 0/2 (0%)
IgI_7_Dscam 707..802 CDD:409546 19/99 (19%)
Ig strand A 707..711 CDD:409546 1/3 (33%)
Ig strand A' 716..720 CDD:409546 1/3 (33%)
Ig strand B 723..732 CDD:409546 4/8 (50%)
Ig strand C 738..744 CDD:409546 0/5 (0%)
Ig strand C' 750..753 CDD:409546 0/2 (0%)
Ig strand D 761..764 CDD:409546 0/2 (0%)
Ig strand E 767..773 CDD:409546 2/5 (40%)
Ig strand F 780..788 CDD:409546 3/7 (43%)
Ig strand G 793..802 CDD:409546 1/8 (13%)
Ig 806..892 CDD:472250 11/85 (13%)
Ig strand B 823..827 CDD:409353 0/3 (0%)
Ig strand C 836..840 CDD:409353 0/3 (0%)
Ig strand E 868..872 CDD:409353 1/3 (33%)
Ig strand F 882..887 CDD:409353 0/4 (0%)
FN3 <904..1195 CDD:442628 81/308 (26%)
FN3 906..1006 CDD:238020 23/104 (22%)
fn3 1221..1306 CDD:394996 21/90 (23%)
Ig 1336..1396 CDD:409353 2/4 (50%)
Ig strand B 1336..1340 CDD:409353 2/4 (50%)
Ig strand E 1371..1375 CDD:409353
Ig strand F 1385..1390 CDD:409353
FN3 <1407..>1606 CDD:442628
fn3 1408..1491 CDD:394996
cntn3a.2XP_001340839.6 None
Blue background indicates that the domain is not in the aligned region.

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