DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment corn and Srrm1

DIOPT Version :9

Sequence 1:NP_729220.2 Gene:corn / 38786 FlyBaseID:FBgn0259173 Length:1107 Species:Drosophila melanogaster
Sequence 2:NP_648627.1 Gene:Srrm1 / 39483 FlyBaseID:FBgn0036340 Length:954 Species:Drosophila melanogaster


Alignment Length:796 Identity:162/796 - (20%)
Similarity:264/796 - (33%) Gaps:238/796 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    42 PGNCDGS--DSGLDVASCCHSRITLQRGLSSTSGGYTSSNGLEEIYDSCELKVTTVAQTPSETGS 104
            |.|.:||  .:..:.|:...::|. :||.||                         |..|.....
  Fly   177 PANNNGSVPSAAREAAANAAAKIR-KRGSSS-------------------------AARPGSRER 215

  Fly   105 EKTSPPR-----RTGSVKKKVAMFEPEPTGTPAKDQLRGRVA------------NLKRAESLPRN 152
            ..:..||     |:.:..||....||.|..|     :.||.:            |..|:.|..|:
  Fly   216 RSSRRPRSRSRSRSRTAGKKTGSVEPAPAKT-----VNGRHSTDKSSPVPPASKNKSRSRSHSRS 275

  Fly   153 SAAPGTPGTPSTHRDKARLSTSSFRVPSTTGTPSSSRLARPQKPDTLPNALNRAQSVQRLTQVQR 217
            .:......:||..|.::|   ||.|.....|..||..|:..:..|...:..|: .|||...|.:.
  Fly   276 RSPRSRSRSPSAKRSRSR---SSSRRSRRRGRSSSISLSPERNQDQFEHRRNK-NSVQNKRQYRN 336

  Fly   218 -----TPSLSRARTPGTPSDDGRWPANRGAARRGMSVTPEVTTNRMRGSPAPGGTLPRRRKQQSV 277
                 ..|:.|.      :|.||.....|..|||        ..|.    :|.|..|.|      
  Fly   337 NRGDSASSMERG------NDRGRQFGGGGGGRRG--------GRRF----SPRGRSPMR------ 377

  Fly   278 EDLTGG----RLSRSNSISRAAIVDARMTSSVMVVPTSRRSLAPAAAKVNSLRRPQPATPRTRIY 338
            :|..||    |..||||..|:.  ..|::.|.|     |.|.:|  .:.|:.||    :|.....
  Fly   378 QDNGGGNGGNRFQRSNSRRRSR--SRRLSRSPM-----RYSRSP--RRFNNRRR----SPMMNFR 429

  Fly   339 -----------HETAVQTALTSEDLEQVLGGGLLQTRAVDAV----------------EQRNQST 376
                       |....|....|.:..   |||.:..:|..:.                .|..|..
  Fly   430 GGGRGGGRGGGHRQMWQHRGGSPNFR---GGGRIHWQARHSPGGGGRGGGGGMGRFDRRQSPQQN 491

  Fly   377 QAEPDQREFELEQLRHEVRQLSGKLQREREEKLAMQQELHLNTERVMGMLELARVVSASAGTPTS 441
            :...|.|:..::|.:...:|.|......|  :.:..|:...:.:|                .|.|
  Fly   492 RYNRDHRQSPMQQNQPFRKQFSPHQGPGR--RFSSPQQRRNSRDR----------------RPNS 538

  Fly   442 ED----SGDGSGH----DSLLMLESQIQISGHELFERQQEIGQLRSMCRALQLEMRRSLATQQLL 498
            .:    .|.|.||    |:.....::...||.....|||   :.||   |...|.|||..::...
  Fly   539 RERRSSPGGGGGHMNRWDNPPPARNRRSSSGSSAGGRQQ---RQRS---ASPPEKRRSSHSRSRS 597

  Fly   499 LQEKAAIEQESSELQDFLQHEKAAQCDALRDLEADYQAVKLQLANREEEAKVLRDECRHLVRLNE 563
            |....:..:.||      ||.:..:....|. ..:|....:...          |.||     .|
  Fly   598 LSRNRSRSRSSS------QHSRKRESPIGRS-SVEYAGPAVNTI----------DLCR-----EE 640

  Fly   564 QRRQ----------ENRLLQTKFTALENKSRELI--HQQNASVAGASTALSGL--HSRLDGLVEQ 614
            |:|:          |...:::.:.:|.......:  |::.|:...|:.|.:.:  .||     :|
  Fly   641 QQRKNKPETIIVLDEGPAVRSSYASLSRTPSPFLKPHERLAAAKAAAAASAAVPKKSR-----DQ 700

  Fly   615 LVYSYSISEQDLEDIRFQAETEHVQNGQRPNGLDLPICPAASGDAIHTLVLASDGSLS------- 672
            ...|.|.|..:.:|     ..|..:..::|..::      .|......:..:|:.|.|       
  Fly   701 SQSSSSDSSAESDD-----SEEQPRRKKQPTNME------TSKGKKEKVRRSSESSTSSEQSDDE 754

  Fly   673 -------------PQRNQSFIAAVIGAIRQATTHSGKRLSLRQAGKKNGVGLGSAQAVSAGTQGQ 724
                         .||.....||:.|..::......||.|.::: |:..:..|..::.|:..:|.
  Fly   755 DNSSGDERLKKKLQQRKSKEAAALKGKEKEHEKEKDKRRSDKKS-KRGAISSGDEESTSSRKRGH 818

  Fly   725 EPQGN---GDDSDSTE 737
            :....   ||:|||.:
  Fly   819 KKTRRDEAGDNSDSED 834

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
cornNP_729220.2 PHA03247 <92..336 CDD:223021 67/269 (25%)
SMC_prok_B <340..627 CDD:274008 60/324 (19%)
Srrm1NP_648627.1 PWI 43..113 CDD:279781
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S3004
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.950

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