DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment msl-3 and Msl3

DIOPT Version :9

Sequence 1:NP_523951.1 Gene:msl-3 / 38779 FlyBaseID:FBgn0002775 Length:512 Species:Drosophila melanogaster
Sequence 2:XP_008771391.2 Gene:Msl3 / 317464 RGDID:1549763 Length:531 Species:Rattus norvegicus


Alignment Length:536 Identity:149/536 - (27%)
Similarity:241/536 - (44%) Gaps:88/536 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 FHKGEIVLCYEPDKSKARVLYTSKVLNVFERRNEHGLRFYEYKIHFQGWR-PSYDRCVRATVLLK 74
            ||.||.|||:|||.:||||||.:|:::|...::|.|.:..||.|||.||. .|:||......:|.
  Rat    11 FHSGEKVLCFEPDPTKARVLYDAKIIDVIIGKDEKGRKIPEYLIHFNGWNSSSWDRWAAEDHVLH 75

  Fly    75 DTEENRQLQRELAEAAKLQIRGDYSYKGTPDKPSAKKKRGGKAAHVEEPI-VVPMDTGHLEAEHE 138
            ||:|||:|||:||:.|..::||           :.||||..:...|:..: .||:.......|:.
  Rat    76 DTDENRRLQRKLAKKAIARLRG-----------TGKKKRRCRLPGVDSVLKSVPVKEKTKNDENS 129

  Fly   139 MAPTPRAAGNRTRDNSGGKRKEKPPSGDGRLKGNRGRQTETFYNNAINDVSVYNHVPQEDR-IMM 202
            ::.|       ..::.|.|        :|.:|.:|.|:.:.........:|:.:....::| |.:
  Rat   130 ISST-------CHESCGEK--------NGGIKEHRQRRIKVKTKGKKKVLSLRSRKDMDERTITI 179

  Fly   203 RVSERLRELIEYDRNMIKVLGKQHALPARVPIVTIMENFVKQQAVELAISIKQDSSRARNTQS-R 266
            .:.|.|::.:|.|...|....:...||.:..|:||:|::||..|:..|.|..:   |.|:..: .
  Rat   180 EIPEVLKKQLEDDCYYINRRKRLVKLPCQTNIITILESYVKHFAINAAFSANE---RPRHHHAMM 241

  Fly   267 NARMEREYDRVMSTVCMLKEVVDGLRIYFEFHVDDHLLYT-EEKEYVHNYLTDDN----MRNCSL 326
            :|.|...|......|.:.||:||||||.|::.:...|||. |:.:|  ..:|...    ::..:.
  Rat   242 HAHMNVHYVPAEKNVDLCKEMVDGLRITFDYTLPLVLLYPYEQTQY--KRVTSSKFFLPIKESTT 304

  Fly   327 ILNKSYEYINPS---------GDTELIGLDGTPVV----------------EGSGDTNGQIGVIN 366
            ..|:|.|.::||         ..||.....|.|..                .....||......:
  Rat   305 TTNRSQEELSPSPPLLNPSTPQSTESQPPTGEPATPKRRKAEPEALQSLRRSTRHSTNCDRLSES 369

  Fly   367 IGGPEYEKQLQ-------KCLLYIVTASGKNTAQAYERTS---PYTAAYKLPVEMRGF------- 414
            ...|:.:::.|       |..|::...........:.|:|   |.|.:........||       
  Rat   370 SSSPQPKRRQQDTSTSMPKLFLHLEKTLSVTETPVHSRSSSPIPLTPSKDGSAVFAGFEGRRTNE 434

  Fly   415 LNETFKWRLL-----SAESPPEKSMVFGAPHLVRLMIKMPMFLNASPISNKKLEDLLPHLDAFIN 474
            :||...|:|:     ..:.||..|.::||.||:||.:|:|..|.....|.|.|:.||.|.|.|:.
  Rat   435 INEVLSWKLVPDNYPPGDQPPPPSYIYGAQHLLRLFVKLPEILGKMSFSEKNLKALLKHFDLFLR 499

  Fly   475 YL-ENHREWFDRENFV 489
            :| |.|.::|....:|
  Rat   500 FLAEYHDDFFPESAYV 515

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
msl-3NP_523951.1 MRG 196..486 CDD:283390 88/344 (26%)
Msl3XP_008771391.2 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166343660
Domainoid 1 1.000 112 1.000 Domainoid score I6059
eggNOG 1 0.900 - - E1_KOG3001
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H40749
Inparanoid 1 1.050 136 1.000 Inparanoid score I4458
OMA 1 1.010 - - QHG47495
OrthoDB 1 1.010 - - D1624495at2759
OrthoFinder 1 1.000 - - FOG0006694
OrthoInspector 1 1.000 - - otm44792
orthoMCL 1 0.900 - - OOG6_108548
Panther 1 1.100 - - LDO PTHR10880
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X4893
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1413.810

Return to query results.
Submit another query.