DRSC/TRiP Functional Genomics Resources

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Protein Alignment msl-3 and alp13

DIOPT Version :9

Sequence 1:NP_523951.1 Gene:msl-3 / 38779 FlyBaseID:FBgn0002775 Length:512 Species:Drosophila melanogaster
Sequence 2:NP_593394.1 Gene:alp13 / 2541858 PomBaseID:SPAC23H4.12 Length:337 Species:Schizosaccharomyces pombe


Alignment Length:489 Identity:94/489 - (19%)
Similarity:164/489 - (33%) Gaps:191/489 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 EIVLCYEPDKSKARVLYTSKVLNVFERRNEHGLRFYEYKIHFQGWRPSYDRCVRATVLLKDTEEN 79
            |.|||:.     ..:||.:|:::. |.:.:    ...|.||::||:.|:|..|....:|:.||||
pombe     9 ERVLCFH-----GPLLYEAKIVDT-EMKGD----VTTYLIHYKGWKNSWDEWVEQDRILQWTEEN 63

  Fly    80 RQLQRELAEAAKLQIRGDYSYKGTPDKPSAKKKRGGKAAHVEEPIVVPMDTGHLEAEHEMAPTPR 144
            .:.|:||..||          ..|..||::||.....:.|                         
pombe    64 LKTQKELKNAA----------ISTRQKPTSKKSASSTSKH------------------------- 93

  Fly   145 AAGNRTRDNSGGKRKEKPPSGDGRLKGNRGRQTETFYNNAINDVSVYNHVPQEDRIMMRVSERLR 209
                   |::|.|           ..|.|.|::.|                              
pombe    94 -------DSTGVK-----------TSGKRSRESST------------------------------ 110

  Fly   210 ELIEYDRNMIKVLGKQHALPARVPIVTIMENFVKQQAVELAI--SIKQDSSRARNTQSRNARMER 272
                     :.|.|..|.||:|          :|.|..|..|  .:|:|.:.....:........
pombe   111 ---------VTVDGDSHELPSR----------IKTQKSESPIPQQVKRDGTTDAKNEETTKPENN 156

  Fly   273 EYDRVMSTVCMLK---EVVDGLRIYFEFHVDDHLLYTEEKEYVHNYLTDDNMRNCSLILNKSYEY 334
            |.|.......:.|   .|.|.|::                     :|.||              :
pombe   157 EKDDFEEEPPLPKHKISVPDVLKL---------------------WLVDD--------------W 186

  Fly   335 INPSGDTELIGLDGTPVVEGS---------GDTNGQIGVINIGGPEYEKQLQKCLLYIVTASGKN 390
            .|.:.:.:||.:...|.|..:         ...|.:|.|     ..:|:.:...::|.....|..
pombe   187 ENITKNQQLIAIPRNPTVRAAIAAFRESKISHLNNEIDV-----DVFEQAMAGLVIYFNKCLGNM 246

  Fly   391 TAQAYERTSPYTAAYKLPVEMRGFLNETFKWRLLSAESPPEKSM--VFGAPHLVRLMIKMPMFLN 453
            ....:||..     |   :|:|              :..|:..|  ::|..||:||.:.:|..::
pombe   247 LLYRFERQQ-----Y---LEIR--------------QQYPDTEMCDLYGVEHLIRLFVSLPELID 289

  Fly   454 ASPISNKKLEDLLPHLDAFINYLENHR-EWFDRE 486
            .:.:.::.:|.||.:::.|:.||..|: |:|.:|
pombe   290 RTNMDSQSIECLLNYIEEFLKYLVLHKDEYFIKE 323

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
msl-3NP_523951.1 MRG 196..486 CDD:283390 54/306 (18%)
alp13NP_593394.1 Tudor-knot 6..57 CDD:288553 16/57 (28%)
MRG 157..323 CDD:283390 42/227 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3001
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR10880
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.910

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