DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Mp and col15a1b

DIOPT Version :10

Sequence 1:NP_001246651.1 Gene:Mp / 38769 FlyBaseID:FBgn0260660 Length:1039 Species:Drosophila melanogaster
Sequence 2:XP_009296788.1 Gene:col15a1b / 558137 ZFINID:ZDB-GENE-070912-689 Length:1315 Species:Danio rerio


Alignment Length:1256 Identity:385/1256 - (30%)
Similarity:514/1256 - (40%) Gaps:342/1256 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 LTDIMNNNQFAGIEFGEAEDGFPAFRFLQTADVKSPYRMLLPEKLY-EFAILITFRQSSLKGGYL 104
            |||::.......:.|....:|:||:.|...|:|....:..:||..: :|||::|.:.||.:||.|
Zfish    93 LTDLVGMPLPPSVSFITGYEGYPAYSFGPHANVGRLTQSFVPEPFFTDFAIIVTVKPSSSRGGVL 157

  Fly   105 FSVVNPLDTVVQLGVHLSPVVKNSYNVSLVYTQADQNIGRKLASFGVAHVPDKWNSIALQVLSDK 169
            |::.:|..|:||||:.|:||...:..:.|.|::.......::|||.|..:..:|:...|.|...:
Zfish   158 FAITDPSQTIVQLGLALTPVEDQTQRIVLYYSEPRSANSAEVASFKVPDMTQQWSRFTLSVERQE 222

  Fly   170 VSFYYDCELRNTTLVTREPIELVFDSASTLYIGQAGSIIGGKFEGYLEKINVYGNPDAINVTCMP 234
            |..|.||:..:.....|....|.|...|.:::..|||....:|.|.::::.:           .|
Zfish   223 VRLYMDCDEYHIAPFKRSQQPLSFKPGSGIFVANAGSTGLERFVGSIQQLVI-----------KP 276

  Fly   235 PPKATIAPTTADDGSIFYEG--SGENILFEDSTEANILSDDFWNTGDEATDIFDASGMQPP---- 293
            .|:|.......||.|:...|  ||:.. ::|..|.....:.|..|.::...:...|.::.|    
Zfish   277 DPRAAEEQCEEDDPSLQASGDRSGDGD-YDDEEEHARREETFGQTNNKEKTLRPTSPVEAPPIQS 340

  Fly   294 ---------GQTQYTHERPYRGI---------KGEKGERGPKGDSIRGPPGPPGPPGPK------ 334
                     |......||..||.         .|:|||||..|.:  ||||||||||..      
Zfish   341 PDIEEGGFSGHVTPIDERLLRGTYKTDETGERVGQKGERGEPGPA--GPPGPPGPPGTSVPIRHS 403

  Fly   335 ---GETAPYPPFVETTSAGAKYTGECTCNASDILEAIKDNESLRESLRGAPGTPGKDGKPGTPGH 396
               |...|..|..:....|                        |....|.||:.|:|||||..|.
Zfish   404 GQPGPRGPQGPIGQPGGRG------------------------RPGKDGQPGSKGEDGKPGQRGQ 444

  Fly   397 TGATGVPGARGARGSEGAQG--------------------------------------------L 417
            ||..|:||..|.:|.:|..|                                            |
Zfish   445 TGPPGLPGESGVKGEKGDPGVGRTGLPGPPGPPGPPGPSKPVKVPYGFDALGSGFGDADIDTELL 509

  Fly   418 KGEPGVDGLPGVMGPPGP--------PGPPGLP--ENYD----------ESLMVNSMGAFRGTTQ 462
            :|.||..|.||:.|||||        |||||.|  :..|          :..:....|......:
Zfish   510 RGPPGPPGPPGIPGPPGPNSPLGGLLPGPPGAPGKDGRDGQSGLPGVPGQDGLPGQQGPKGAKGE 574

  Fly   463 PGAKGVPGEKGDAGQKGERGDPGHKGAHGPSGAKGEPGEP------------------------- 502
            .|.:|.||.||:.|..|:||.||..|..||.|..|.||.|                         
Zfish   575 HGIRGPPGPKGENGDPGQRGPPGPFGTMGPRGLPGPPGPPGPPGPINNNFMVDTLKDFEGSGESG 639

  Fly   503 ------------GTPGLPGLPGQVGQPG----------------------GLDGLASANGTKGEK 533
                        |.|||||.||..|.||                      ||.||..|.|.||:|
Zfish   640 SFLGTGILKGYQGPPGLPGPPGPQGPPGANGPPGLSVKGERGSPGPDGIHGLAGLPGARGPKGDK 704

  Fly   534 GEKGEKGMRGRRG--GTGATGPIGPPGK------------------------PGPMGDIGHSGR- 571
            |..||||.|||.|  .||..||.||||.                        |||||..|..|| 
Zfish   705 GNPGEKGERGRDGLNITGPPGPPGPPGPIINFQDLFLNDTAAKLNLTKIRGLPGPMGPEGLPGRA 769

  Fly   572 --PGMTGPKGEM------GPKGPKGDSG-----------------GREGLKGDKGDRGQDGRDGL 611
              ||..|||||:      ||.|.|||.|                 |..|.||.|||.|..|..|:
Zfish   770 GFPGPRGPKGEIGFPGVQGPPGLKGDKGEPGVSIAADGSIITSLRGPRGPKGTKGDIGLAGPHGI 834

  Fly   612 PGP---------------PGLPSTGGGDGDSGGVQYIPM--PGPPGPPGPPGL------------ 647
            |||               ||.|...|..||.|.... |.  |||||||||||.            
Zfish   835 PGPIGPPGLKGGYGIPGRPGRPGIAGRKGDKGDASG-PSGPPGPPGPPGPPGRVIGLNGTVFPVP 898

  Fly   648 ---------------------------PGLS-------ISGPKGEPGVDSRSSFFGDASYYGRPG 678
                                       ||||       ..||||:.|.:.:....||....|.||
Zfish   899 PRPHCKTPVNNNNSQQGVKGEKGDEGNPGLSGTPVPHAYVGPKGDNGYNGQKGEKGDPGLPGPPG 963

  Fly   679 --ARSSLDELKALRELQDLRDRP--DGTAEPPRQPGHSHKHEETLGLVDGEEPYFSASSSNMNMK 739
              .|:.|...|.    :.:...|  .|...||..||:.....:......|.....|..||..::.
Zfish   964 LPGRTGLVGPKG----ESIVGPPGDTGAPGPPGLPGYGSPGPQGPPGAPGPPGTSSLYSSAASLP 1024

  Fly   740 IVPG-------------AVTFQNIDEMTKKSALNPPGTLAYITEEEALLVRVNKGWQYIALGTLV 791
            ..||             ..|::|...:.::|:....||:.|:.::..|.:||..||:.|.||.|:
Zfish  1025 GPPGPPGPPGAPGYGNPVSTYKNSQTLMRESSQAAEGTMGYVIDKSELYIRVRGGWKKIELGELI 1089

  Fly   792 PIATPAPPTTVA-----PSMRF--DLQSKNLLNSPP--PLLNTPTWYPRMLRVAALNEPSTGDLQ 847
            |:...:..:.::     ||.|.  .:.|:.|.:..|  .||...|.....|.:.|||.|.:||:.
Zfish  1090 PVPEDSSSSALSQGLSRPSDRSVPRVHSQELKSFLPGYNLLPDTTHSMPALHLVALNAPFSGDMH 1154

  Fly   848 GIRGADFACYRQGRRAGLLGTFKAFLSSRVQNLDTIVRPADR-DLPVVNTRGDVLFNSWKGIFNG 911
            ||||||:.||:|.|..||..|::|||||.:|:|.|||:.||| :|||||.:|:|||:||..:|:|
Zfish  1155 GIRGADYQCYQQARARGLTSTYRAFLSSHLQDLSTIVKKADRFNLPVVNLKGEVLFSSWMAMFSG 1219

  Fly   912 QGGFFSQAPRIYSFSGKNVMTDSTWPMKMVWHGSLPNGERSMDTYCDAWHSGDHLKGSFASNLDG 976
            .||.|.....||||.|:||:||..|..|:|||||...|.|....||:||.:||......||.|..
Zfish  1220 NGGVFDPLTPIYSFDGRNVLTDQAWSQKLVWHGSSTVGIRMTTNYCEAWRTGDMAVTGQASLLQT 1284

  Fly   977 HKLLEQKRQSCDSKLIILCVE 997
            .:||.|..:||.:..||||:|
Zfish  1285 GRLLGQHTRSCSNHFIILCIE 1305

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MpNP_001246651.1 LamG 58..222 CDD:473984 49/164 (30%)
gly_rich_SclB <292..>421 CDD:468478 49/203 (24%)
gly_rich_SclB <379..>616 CDD:468478 131/426 (31%)
Collagen_trimer 744..792 CDD:466257 15/47 (32%)
Endostatin-like 831..999 CDD:238151 86/168 (51%)
col15a1bXP_009296788.1 LamG 99..278 CDD:473984 51/189 (27%)
gly_rich_SclB <368..>597 CDD:468478 71/254 (28%)
gly_rich_SclB <545..>799 CDD:468478 81/253 (32%)
gly_rich_SclB <741..>983 CDD:468478 71/246 (29%)
Collagen_trimer 1042..1090 CDD:466257 15/47 (32%)
Endostatin-like 1138..1307 CDD:238151 86/168 (51%)

Return to query results.
Submit another query.