DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mp and col-135

DIOPT Version :10

Sequence 1:NP_001246651.1 Gene:Mp / 38769 FlyBaseID:FBgn0260660 Length:1039 Species:Drosophila melanogaster
Sequence 2:NP_001255859.1 Gene:col-135 / 3565413 WormBaseID:WBGene00000708 Length:660 Species:Caenorhabditis elegans


Alignment Length:487 Identity:176/487 - (36%)
Similarity:205/487 - (42%) Gaps:98/487 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   234 PPPKAT----IAPTTADDGSIFYEG-SGENILFEDSTEANILSDDFWNTGDEATDIFDASGMQ-P 292
            ||...|    :..|...||:...:| :|:             ..|..:||.....:....|.| |
 Worm    68 PPGTGTGKDGVPGTNGKDGTPGDKGDTGD-------------KGDKGDTGAPGVGVKGDPGAQGP 119

  Fly   293 PGQTQYTHERPYRGIKGEKGERGPKGD----SIRGPPGPPGPPGPKGETAPYPPFVETTSAGAKY 353
            ||:.....::...|.||.||:.|.|||    ..:|..|.||..|.|||                 
 Worm   120 PGEKGKDGDKGAPGAKGSKGDDGKKGDKGSSGEKGEKGSPGQKGDKGE----------------- 167

  Fly   354 TGECTCNASDILEAIKDNESLRESLRGAPGTPGKDGKPGTPGHTGATGVPGARGARGSEGAQGLK 418
            .||...|.|...:..|..       :||.|.||..|..|..|..||.|.||::|.:||:||:|..
 Worm   168 KGEKGSNGSPGSKGDKGE-------KGADGNPGPKGDKGADGAKGADGTPGSKGDKGSDGAKGAD 225

  Fly   419 GEPGVDGLPGVMGPPGPPGPPGLPENYDESLMVNSMGAFRGTTQPGAKGVPGEKGDAGQKGERGD 483
            |.||..|..|..|..|..|..|            ..|| .||  ||:||..||||..|.||..|.
 Worm   226 GNPGSKGDTGDKGEKGSDGAKG------------DKGA-NGT--PGSKGDKGEKGADGAKGADGT 275

  Fly   484 PGHKGAHGPSGAKGEPGEP---------------GTPGLPGLPGQVGQPG--GLDGLASANGTKG 531
            ||.||..|..||||..|.|               |..|..|.||..|..|  |.||...|:||.|
 Worm   276 PGSKGDKGADGAKGADGTPGQKGDKGEKGLDGPKGDKGADGTPGAKGDKGDKGADGAKGADGTPG 340

  Fly   532 EKGEKGEKGMRGRRGGTGATGPIGPPGKPGPMGDIGH---------SGRPGMTGPKGEMGPKGPK 587
            .||:|||||:.|.:|..||.|..|..|.||..||.|.         .|.||..|.|||.|..|||
 Worm   341 SKGDKGEKGLDGPKGDKGADGAKGANGTPGAKGDKGEKGTDGAKGADGTPGAKGDKGEKGLDGPK 405

  Fly   588 GDSG--GREGLKGDKGDRGQDGRDGLPGPPGLPSTGGGDGDSGGVQYIPMPGPPGPPGPPGLPGL 650
            ||.|  |..|.|||||::|.||..|..|.||.....|.||..|.      .|.||..|..|..||
 Worm   406 GDKGADGTPGAKGDKGEKGADGAKGADGTPGSKGDKGADGAKGA------DGTPGQKGDKGEKGL 464

  Fly   651 SISGPKGEPGVDSRSSFFGDASYYGRPGARSS 682
              .||||:.|.|......||....|..||:.:
 Worm   465 --DGPKGDKGADGTPGAKGDKGEKGADGAKGA 494

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MpNP_001246651.1 LamG 58..222 CDD:473984
gly_rich_SclB <292..>421 CDD:468478 45/132 (34%)
gly_rich_SclB <379..>616 CDD:468478 114/264 (43%)
Collagen_trimer 744..792 CDD:466257
Endostatin-like 831..999 CDD:238151
col-135NP_001255859.1 gly_rich_SclB <66..>256 CDD:468478 70/239 (29%)
gly_rich_SclB <184..>409 CDD:468478 101/246 (41%)
gly_rich_SclB <343..>567 CDD:468478 68/160 (43%)
Collagen 582..638 CDD:460189
Blue background indicates that the domain is not in the aligned region.

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