DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mp and Col20a1

DIOPT Version :9

Sequence 1:NP_001246651.1 Gene:Mp / 38769 FlyBaseID:FBgn0260660 Length:1039 Species:Drosophila melanogaster
Sequence 2:XP_038962690.1 Gene:Col20a1 / 311716 RGDID:1563901 Length:1367 Species:Rattus norvegicus


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MpNP_001246651.1 LamG 58..222 CDD:304605
Collagen 378..432 CDD:189968
Collagen 464..518 CDD:189968
Collagen 494..615 CDD:189968
Endostatin-like 831..999 CDD:238151
Col20a1XP_038962690.1 vWA_collagen_alphaI-XII-like 222..386 CDD:238759
fn3 423..501 CDD:394996
fn3 522..586 CDD:394996
fn3 603..671 CDD:394996
fn3 692..768 CDD:394996
fn3 797..865 CDD:394996
LamG 887..1081 CDD:419873
Collagen 1172..1215 CDD:396114
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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