DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mp and Col7a1

DIOPT Version :9

Sequence 1:NP_001246651.1 Gene:Mp / 38769 FlyBaseID:FBgn0260660 Length:1039 Species:Drosophila melanogaster
Sequence 2:NP_001100328.2 Gene:Col7a1 / 301012 RGDID:1311417 Length:2944 Species:Rattus norvegicus


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MpNP_001246651.1 LamG 58..222 CDD:304605
Collagen 378..432 CDD:189968
Collagen 464..518 CDD:189968
Collagen 494..615 CDD:189968
Endostatin-like 831..999 CDD:238151
Col7a1NP_001100328.2 vWA_collagen_alphaI-XII-like 38..202 CDD:238759
fn3 236..318 CDD:394996
fn3 334..406 CDD:394996
fn3 427..488 CDD:394996
FN3 510..589 CDD:238020
FN3 599..681 CDD:238020
FN3 688..772 CDD:238020
fn3 778..856 CDD:394996
fn3 868..935 CDD:394996
FN3 959..1045 CDD:238020
VWA 1055..1223 CDD:395045
PRK07764 <1509..1714 CDD:236090
Collagen 1580..1635 CDD:396114
Collagen 1613..1668 CDD:396114
Collagen 1839..1894 CDD:396114
Collagen 1878..1932 CDD:396114
PHA03169 2053..>2202 CDD:223003
Collagen 2102..2158 CDD:396114
Collagen 2315..2363 CDD:396114
PRK12678 2403..>2636 CDD:237171
Collagen 2457..2511 CDD:396114
Collagen 2533..2589 CDD:396114
Collagen 2611..2666 CDD:396114
Collagen 2728..2774 CDD:396114
KU 2877..2932 CDD:238057
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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