DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mp and col4a1

DIOPT Version :10

Sequence 1:NP_001246651.1 Gene:Mp / 38769 FlyBaseID:FBgn0260660 Length:1039 Species:Drosophila melanogaster
Sequence 2:XP_002933064.3 Gene:col4a1 / 100124870 XenbaseID:XB-GENE-6451485 Length:1669 Species:Xenopus tropicalis


Alignment Length:749 Identity:216/749 - (28%)
Similarity:265/749 - (35%) Gaps:274/749 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   235 PPKATIAPTTADDGS----IFYEGSGENILFEDSTEANILSDDFWNTGDEATDIFDASGMQPPGQ 295
            ||.|...|:|...||    ::|...||..:..::.|..                       .|||
 Frog   228 PPGAPCKPSTEPQGSENEQVYYGEKGEKGMPGENGERG-----------------------QPGQ 269

  Fly   296 TQYTHERPYRGIKGEKGERGPKG-------------DSIRGPPGPPGPP------GPKGETAPY- 340
            :       ::|.|||.|..||:|             ..:.|.||.||||      |.|||:.|. 
 Frog   270 S-------FKGEKGEPGPLGPRGKPGKDGDQGEKGLQGVPGIPGFPGPPGFGGTKGEKGESGPQG 327

  Fly   341 PPFVETTSAGAKYTGEC-TCNASDI-LEAIKDNESLRESLRGAPGTPGKDGKPGT--PGHTGATG 401
            ||.:..::      ||. .|...|. |.....::. .:.|:||.|.||..|.||.  ||.||..|
 Frog   328 PPGIVVSN------GEIEVCEKGDRGLPGFPGSKG-DKGLKGAQGFPGIPGSPGVPLPGSTGPPG 385

  Fly   402 VPGARGARGSEGAQGL-----KGEPGVDGLPGVMGPP-----------GPPGPPGLPENYDESLM 450
            .||.||.:|..|..||     ||..|..|.||:.|||           |.||.||||.|..:   
 Frog   386 FPGERGEKGQHGLPGLALQGPKGRDGFPGPPGLPGPPGAIDTSIECKSGQPGDPGLPGNPGQ--- 447

  Fly   451 VNSMGAFRGTT-------------------QPGAKGVPGEKGDAGQKGERGDPGHKGAHGP---- 492
             |.....||..                   .||.:|.||::|.:|..|.:||.||.|..||    
 Frog   448 -NGFQGERGQKGDKGDACPSCDLVPPGLPGPPGPQGPPGDQGASGVPGIKGDRGHPGYDGPPGAP 511

  Fly   493 -----------SGAKGEP-------------GEPGTPGLPGLPGQVGQPG--GLDGLASANGTKG 531
                       .||||||             ||.|.||.||.||:.|:||  |..||..:.|..|
 Frog   512 GPQGSAGLMGSPGAKGEPGEVFFEPRLKGDKGESGLPGHPGAPGREGRPGIDGQQGLPGSKGVAG 576

  Fly   532 EKGEKGEKGMRGRRG--------------GTGA-------------------------------- 550
            ..|.|||:|:.|.||              |||.                                
 Frog   577 TIGAKGEQGLPGDRGSPGNPGERGFPGPAGTGTSGLPGEKGEPGVPGFVGIPGTPGAKGEPGKAI 641

  Fly   551 --TGPIGP---------PGKPGPMGDIGHSGRPGMTGPKGE--------MGPKGPKGDSG----- 591
              |||.||         ||..|..|..||.||||..|.|||        .||.|.||..|     
 Frog   642 IKTGPPGPMGGAGIPGFPGDQGEKGSPGHPGRPGSQGEKGEPGLPGVGYPGPSGEKGFQGMPGTP 706

  Fly   592 ------------GREGLKGDKGDRGQDGR--------DGLPGPPGLPSTGGGDGDSG-----GVQ 631
                        |..||:||.|.:|:.|.        .|.|||.|:|...|..|.||     |..
 Frog   707 GQAGFPGPQGVDGLPGLRGDPGPKGEPGLGLPGPKGVQGPPGPVGIPGDKGNPGASGVPGEQGFS 771

  Fly   632 YIP----------MPGPPGPPGPPGLPGLSISGPKGEPGVDSRSSFFGDASYYGR---------- 676
            .:|          :.|.||..||||:||:...|.:|..|....|.|.|.|...|.          
 Frog   772 GVPGHPGHKGEAGIVGVPGIQGPPGVPGMGPKGQQGSSGPQGLSGFPGPAGVKGERGYAGFPGLD 836

  Fly   677 -PGARSSLDELKALRELQDLRDRPDGTAEPPRQPGHSHKHEETLGLVDGEEPYFSASSSNMNMKI 740
             ||.:.....:.:        ..|.|....|.|||...|.    ||     |.|......|.:..
 Frog   837 MPGPKGDKGNIGS--------PGPTGATGIPGQPGAPGKE----GL-----PGFPGPKGEMGVMG 884

  Fly   741 VPGAVTFQN-------IDEMTKKSALNPPGTLAY 767
            :||::....       :.|........||||..|
 Frog   885 MPGSIGQPGAPGSPGALGEKGDAGPFGPPGTSGY 918

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MpNP_001246651.1 LamG 58..222 CDD:473984
gly_rich_SclB <292..>421 CDD:468478 54/157 (34%)
gly_rich_SclB <379..>616 CDD:468478 127/393 (32%)
Collagen_trimer 744..792 CDD:466257 6/31 (19%)
Endostatin-like 831..999 CDD:238151
col4a1XP_002933064.3 gly_rich_SclB <39..>297 CDD:468478 22/98 (22%)
gly_rich_SclB <268..>463 CDD:468478 71/212 (33%)
gly_rich_SclB <487..>728 CDD:468478 74/240 (31%)
gly_rich_SclB <778..>1020 CDD:468478 39/158 (25%)
gly_rich_SclB <902..>1164 CDD:468478 6/17 (35%)
gly_rich_SclB <1179..>1431 CDD:468478
C4 1445..1551 CDD:460201
C4 1555..1666 CDD:460201
Blue background indicates that the domain is not in the aligned region.

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