DRSC/TRiP Functional Genomics Resources

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Protein Alignment bin and Foxb2

DIOPT Version :9

Sequence 1:NP_523950.2 Gene:bin / 38766 FlyBaseID:FBgn0045759 Length:676 Species:Drosophila melanogaster
Sequence 2:NP_001162056.1 Gene:Foxb2 / 691398 RGDID:1585019 Length:425 Species:Rattus norvegicus


Alignment Length:417 Identity:98/417 - (23%)
Similarity:140/417 - (33%) Gaps:127/417 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   310 EKPALSYINMIGHAIKESPTGKLTLSEIYAYLQKSYEFFRGPYVGWKNSVRHNLSLNECFKKLPK 374
            :||..|||::...||:.|....|.||:||.::.:.:.::|.....|:||:|||||.|:||.|:|:
  Rat    12 QKPPYSYISLTAMAIQHSAEKMLPLSDIYKFIMERFPYYREHTQRWQNSLRHNLSFNDCFIKIPR 76

  Fly   375 GMGVGKPGKGNYWTIDENSAHLFEDEGSLRRRPRGYRSKIKVKPYAGHANGYYASGYGDAGMDNG 439
              ...:||||::|.:..:...:||:...||||.|     .||. .|.||:           :.:|
  Rat    77 --RPDQPGKGSFWALHPDCGDMFENGSFLRRRKR-----FKVL-RADHAH-----------LHSG 122

  Fly   440 NYYASPAFASYDYSAAGATGVSPAGGQGFADPWNAHAAHSGSSSVG------------------- 485
                         |:.||.|..|.|......|.:||..|.......                   
  Rat   123 -------------SSKGAPGTGPGGHLHPHHPHHAHHHHHHHHHAAHHHHHHHPPQPPPPPPHMV 174

  Fly   486 --VGMGVGPLPQYTNISCLAAGGNVNGSATTPPLAHSALGMAPSASSSSSPLGAAATLQSDYAPT 548
              ......|.||                   ||...|.....|...|..........:|...|..
  Rat   175 PYFHQQPAPAPQ-------------------PPHLPSQPAQQPPPQSQPPQTSHPGKMQEAAAVA 220

  Fly   549 ASLVAAGYSYATSAGSLDNGLRSISLQQLP--GLSSIQHAQAQAQAQAHHHHH------------ 599
            |:..||.   |.:.||:..      |.|.|  ||.|...|.|.|.|......|            
  Rat   221 AAAAAAA---AAAVGSVGR------LSQFPPYGLGSAAAAAAAAAASTTGFKHPFAIENIIGRDY 276

  Fly   600 --------------QHHASHPSHSHQGH--GSMHQNHGTSSTTPPPSQSGGSHGID--------- 639
                          .||..:|.....|:  ||:..:.|...:....:.:..:.|:.         
  Rat   277 KGVLQAGGLPLASVMHHLGYPVPGQLGNVVGSVWPHVGVMDSVAAAAAAAAAAGVPVGPEYGAFG 341

  Fly   640 -------HSPIDRKPAYLPPISPPPMM 659
                   ||.....||...||.|.|.:
  Rat   342 VPVKALCHSANQSLPAVPVPIKPTPAL 368

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
binNP_523950.2 Forkhead 311..399 CDD:278670 33/87 (38%)
Foxb2NP_001162056.1 FH 13..101 CDD:214627 34/89 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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