DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment bin and foxg1c

DIOPT Version :9

Sequence 1:NP_523950.2 Gene:bin / 38766 FlyBaseID:FBgn0045759 Length:676 Species:Drosophila melanogaster
Sequence 2:NP_001038680.1 Gene:foxg1c / 571323 ZFINID:ZDB-GENE-050419-26 Length:379 Species:Danio rerio


Alignment Length:360 Identity:102/360 - (28%)
Similarity:158/360 - (43%) Gaps:68/360 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   223 PGGGYMSRISTSPSQVI-------SNAHGMPVLNYSSSSSSPAKSLNGSESSPPSQNHLENKVSG 280
            |...:..:.|.|.|.::       |:|...|   .|.|:..||:....::.....:|.|..:...
Zfish     6 PPVSFFHKSSFSISSLLLRHERARSDAQEAP---RSRSAKPPARCHQPADKPVRERNELVTRTEK 67

  Fly   281 SAVVGTGGSSQQDAPSTPDTTKKSGTRRPEKPALSYINMIGHAIKESPTGKLTLSEIYAYLQKSY 345
            ...||.......|.|.     |||   :|:||..||..:|..||::||..:|||:.||.::..::
Zfish    68 KDGVGEPKCEGTDVPE-----KKS---KPDKPPFSYNALIMMAIRQSPERRLTLNGIYEFIMGNF 124

  Fly   346 EFFRGPYVGWKNSVRHNLSLNECFKKLPKGMGVGKPGKGNYWTIDENSAHLF--EDEGSLRRR-P 407
            .::|....||:||:|||||||:||.|:|:  ....|||||||.:|.:|..:|  ...|.|||| .
Zfish   125 PYYRENRQGWQNSIRHNLSLNKCFVKVPR--HYDDPGKGNYWMLDPSSDDVFIGGTTGKLRRRST 187

  Fly   408 RGYRSKIKVKPYAGHANGYYASGYGDAGMDNGNYY-------------ASPAFASYDYSAAGA-- 457
            ...|:|:.:|..|..::...::|...|    |::|             :|||.|.:...||..  
Zfish   188 AASRAKLAMKRGARLSSTAASAGLAFA----GSFYWPVPPFVTLQHRHSSPAAAHHSNYAASVLS 248

  Fly   458 ------TGVSPAG--------------GQGFADPWNAHAAHSGSSSVGVGMGVGPLPQYTNISCL 502
                  :.|:||.              |.|.....::.::.|.|:||.:     ||....:.:.|
Zfish   249 QSARHFSSVAPAAERLLIPSSQEATYYGMGCEQMTSSSSSFSTSASVPL-----PLSAPCSFNLL 308

  Fly   503 AAGGNVNGSATTPPLAH-SALGMAPSASSSSSPLG 536
            :...:...|...|..|. ||.....|..|.:||.|
Zfish   309 SNQSSYFYSHQVPHTAGLSAWSQEESYLSKTSPSG 343

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
binNP_523950.2 Forkhead 311..399 CDD:278670 40/89 (45%)
foxg1cNP_001038680.1 FH 90..178 CDD:214627 40/89 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG2294
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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