DRSC/TRiP Functional Genomics Resources

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Protein Alignment bin and foxd1

DIOPT Version :9

Sequence 1:NP_523950.2 Gene:bin / 38766 FlyBaseID:FBgn0045759 Length:676 Species:Drosophila melanogaster
Sequence 2:NP_998078.2 Gene:foxd1 / 405849 ZFINID:ZDB-GENE-040426-2094 Length:343 Species:Danio rerio


Alignment Length:418 Identity:108/418 - (25%)
Similarity:156/418 - (37%) Gaps:112/418 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   234 SPSQVISNAHGMPVLNYSSSSSSPAKS-------------LNGSESSPPSQNHLENKVSGSAVVG 285
            |.:.|:|....:.|:..........:|             |||   |||.               
Zfish     8 SDASVLSEETDIDVVGEGDDGDGHTRSYVDEVAQMHDEILLNG---SPPG--------------- 54

  Fly   286 TGGSSQQDAPSTPDTTKKSGTRRPEKPALSYINMIGHAIKESPTGKLTLSEIYAYLQKSYEFFRG 350
                  .||....|..|.:......||..|||.:|..||.:||..:||||||..::...:.::|.
Zfish    55 ------VDASPARDPYKPASKNTLVKPPYSYIALITMAILQSPKKRLTLSEICDFISNRFPYYRE 113

  Fly   351 PYVGWKNSVRHNLSLNECFKKLPKGMGVGKPGKGNYWTIDENSAHLFEDEGSLRRRPRGYRSKIK 415
            .:..|:||:|||||||:||.|:|:  ..|.||||||||:|..||.:|::...||||.|..|.:..
Zfish   114 KFPAWQNSIRHNLSLNDCFVKIPR--EPGNPGKGNYWTLDPESADMFDNGSFLRRRKRFKRQQAP 176

  Fly   416 --VKPYAGHANGYYASGYGDAGMDNG----NYYASPAFASYDYSAAGATGVSPAGGQGFADPWNA 474
              ::.:.|......|.|||..|...|    :|:|..|..::....           |....|   
Zfish   177 ELLREHGGFLPSAAAYGYGPYGCGYGLQLQSYHAHSALLAFQQQQ-----------QQQPPP--- 227

  Fly   475 HAAHSGSSSVGVGMGVGPLPQYTNISCLAAGGNVNGSATTPPLA---HSALGMAPSASSSSSPLG 536
                  |.:.|.   :.|.|     |.:.....:..|...|||:   .|:|..|..:....||..
Zfish   228 ------SRNTGT---LIPAP-----SLMPTTTELTRSRFYPPLSPGISSSLQTAAKSPVHRSPFS 278

  Fly   537 AAATLQSDYAPTASLVAAGYSYATSAGSLDNGLRSISLQQLPGLSSIQHAQAQAQAQAHHHHHQH 601
            ..:.:.|..:||.|..|:..|.....              ||...:.||:........|      
Zfish   279 IDSIIGSSLSPTHSHCASRTSPVVPV--------------LPPALAAQHSPNPLLGVLH------ 323

  Fly   602 HASHPSHSHQGHGSMHQNH------GTS 623
                      |..|:|:.:      |||
Zfish   324 ----------GPTSLHETYSNRIVSGTS 341

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
binNP_523950.2 Forkhead 311..399 CDD:278670 44/87 (51%)
foxd1NP_998078.2 Forkhead 74..160 CDD:278670 44/87 (51%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG2294
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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