DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment bin and foxa2

DIOPT Version :9

Sequence 1:NP_523950.2 Gene:bin / 38766 FlyBaseID:FBgn0045759 Length:676 Species:Drosophila melanogaster
Sequence 2:NP_989423.1 Gene:foxa2 / 395063 XenbaseID:XB-GENE-480476 Length:434 Species:Xenopus tropicalis


Alignment Length:510 Identity:126/510 - (24%)
Similarity:197/510 - (38%) Gaps:133/510 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   170 VQLQPLN-HQYASTIKYCSNNTILSANDYQLLT--SQEQAGQQQPQQLPAQQLQHSPGGGYMSRI 231
            :.:.|:| :...|.:...:|.|..|.|...:.|  |....|.             |||.|.|:.:
 Frog    35 LSMNPMNTYMSMSAMSTSANMTAGSMNMSYVNTGMSPSLTGM-------------SPGTGAMTGM 86

  Fly   232 STSPSQVISNAHGMPVLNYSSSSSSPAKSLNGSESSPPSQNHLENKVSGSAVVGTGGSSQQDAPS 296
            .|..:.:.|         :.|.|.||      ..:...|.|.|....:.:::....|.|..:...
 Frog    87 GTGVASMAS---------HLSPSMSP------MSAQATSMNALAPYTNMNSMSPIYGQSNINRSR 136

  Fly   297 TPDTTKKSGTRRPEKPALSYINMIGHAIKESPTGKLTLSEIYAYLQKSYEFFRGPYVGWKNSVRH 361
            .|.|.::|.|.  .||..|||::|..||::||...|||||||.::...:.|:|.....|:||:||
 Frog   137 DPKTYRRSYTH--AKPPYSYISLITMAIQQSPNKMLTLSEIYQWIMDLFPFYRQNQQRWQNSIRH 199

  Fly   362 NLSLNECFKKLPKGMGVGKPGKGNYWTIDENSAHLFEDEGSLRRRPRGYRSKIKVKPYAGHANGY 426
            :||.|:||.|:|:  ...|||||::||:..:|.::||:...|||:.   |.|.:.||        
 Frog   200 SLSFNDCFLKVPR--SPDKPGKGSFWTLHPDSGNMFENGCYLRRQK---RFKCEKKP-------- 251

  Fly   427 YASGYGDAGMDNGNYYASPAFASYDYSAAGATGVSPAGGQGFADPWNAHAAHSGSSSVGVGMGVG 491
                                            .:...||:..::         ||||||      
 Frog   252 --------------------------------SLREGGGKKLSE---------GSSSVG------ 269

  Fly   492 PLPQYTNISCLAAGGNVNGSATTPPLAH---------SALGMAPSASSSSSPLGAAATLQSDYAP 547
               ...|.|..::.||.:..:::.|...         |:.|::|  ..::||...|..|.|.:..
 Frog   270 ---SAANSSSESSVGNESPHSSSSPCQEQKRSLVDMKSSQGLSP--DHAASPASQAQHLLSQHHS 329

  Fly   548 TASLVAAGYSYATSAGSLDNGLRSISLQQLPGLSSIQHAQAQAQAQAHHHHHQHHASHPSH---- 608
            ..|..|..:.......|.::..            ||.:..:..|...|||||.||..|...    
 Frog   330 VLSHEAQSHLKPEHHYSFNHPF------------SINNLMSSEQQHHHHHHHNHHHHHKMDLKAY 382

  Fly   609 ----SHQGHGSMHQNHGTSSTTPPPSQSGGSHGIDHSPIDRKPAYLPPISPPPMM 659
                .:.|:||........||....|      |::.|||....:|...:...|:|
 Frog   383 EQVMHYSGYGSPMTGSLAMSTVTNKS------GLESSPISSDTSYYQGVYSRPIM 431

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
binNP_523950.2 Forkhead 311..399 CDD:278670 40/87 (46%)
foxa2NP_989423.1 Forkhead_N 17..148 CDD:369872 30/142 (21%)
FH 149..237 CDD:214627 41/89 (46%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 249..339 25/149 (17%)
HNF_C 349..423 CDD:370449 22/91 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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