DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment bin and FOXA1

DIOPT Version :9

Sequence 1:NP_523950.2 Gene:bin / 38766 FlyBaseID:FBgn0045759 Length:676 Species:Drosophila melanogaster
Sequence 2:NP_004487.2 Gene:FOXA1 / 3169 HGNCID:5021 Length:472 Species:Homo sapiens


Alignment Length:552 Identity:130/552 - (23%)
Similarity:204/552 - (36%) Gaps:159/552 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   176 NHQYASTIKYCSN----------NTILSANDYQLLTSQEQAGQQQPQQ-------------LPAQ 217
            |..||.|.:..|:          .::.|.|.|..:.:...:|...|..             |...
Human    16 NSYYADTQEAYSSVPVSNMNSGLGSMNSMNTYMTMNTMTTSGNMTPASFNMSYANPGLGAGLSPG 80

  Fly   218 QLQHSPGGGYMSRISTSPSQVISNAHGMPVLNYSSSSSSPAKSLNGSESSPPSQNHLENKVS--- 279
            .:...|||...:..|.:.:.|.:....:......:..:..|.|:||......:.|...:.::   
Human    81 AVAGMPGGSAGAMNSMTAAGVTAMGTALSPSGMGAMGAQQAASMNGLGPYAAAMNPCMSPMAYAP 145

  Fly   280 ---GSAVVGTGGSSQQDAPSTPDTTKKSGTRRPEKPALSYINMIGHAIKESPTGKLTLSEIYAYL 341
               |.:..|.||.::....|.|..          ||..|||::|..||:::|:..|||||||.::
Human   146 SNLGRSRAGGGGDAKTFKRSYPHA----------KPPYSYISLITMAIQQAPSKMLTLSEIYQWI 200

  Fly   342 QKSYEFFRGPYVGWKNSVRHNLSLNECFKKLPKGMGVGKPGKGNYWTIDENSAHLFEDEGSLRRR 406
            ...:.::|.....|:||:||:||.|:||.|:.:  ...|||||:|||:..:|.::||:...|||:
Human   201 MDLFPYYRQNQQRWQNSIRHSLSFNDCFVKVAR--SPDKPGKGSYWTLHPDSGNMFENGCYLRRQ 263

  Fly   407 PRGYRSKIKVKPYAGHANGYYASGYGDAGMDNG-NYYASPAFASYDYSAA-------GATGV--- 460
            .   |.|.:.:|.||...|   ||.|.:|...| .....|:.||...:.:       |.||.   
Human   264 K---RFKCEKQPGAGGGGG---SGSGGSGAKGGPESRKDPSGASNPSADSPLHRGVHGKTGQLEG 322

  Fly   461 SPAGGQGFADPWNAHAAHSGSSSVGVGMGVGPLPQYTNISCLAAGGNVNGSATTPPLAHSALGMA 525
            :||.|.. |.|....  |||:::.|   |...|             ....|:|.||:        
Human   323 APAPGPA-ASPQTLD--HSGATATG---GASEL-------------KTPASSTAPPI-------- 360

  Fly   526 PSASSSSSPLGAAATLQSDYAPTASLVAAGYSYATSAGSLDNGLRSISLQQLPGLSSIQHAQAQA 590
                 ||.| ||.|::.:.:.                                     .|..|..
Human   361 -----SSGP-GALASVPASHP-------------------------------------AHGLAPH 382

  Fly   591 QAQAHHHHHQHHA-SHPSHSHQGHGSMHQNHGT--------------SSTTPPPSQSGGSHGIDH 640
            ::|.|.....|:: :||...:....|..|.|..              .||.|.....|.:.....
Human   383 ESQLHLKGDPHYSFNHPFSINNLMSSSEQQHKLDFKAYEQALQYSPYGSTLPASLPLGSASVTTR 447

  Fly   641 SPIDRKPAYLPPISPPPMMVALNGGGGYYEGL 672
            |||:  |:.|.|              .||:|:
Human   448 SPIE--PSALEP--------------AYYQGV 463

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
binNP_523950.2 Forkhead 311..399 CDD:278670 38/87 (44%)
FOXA1NP_004487.2 Forkhead_N 17..169 CDD:369872 26/151 (17%)
FH_FOXA1 157..268 CDD:410812 46/125 (37%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 269..392 40/195 (21%)
HNF_C 398..461 CDD:401339 16/78 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.