DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment bin and FOXC2

DIOPT Version :9

Sequence 1:NP_523950.2 Gene:bin / 38766 FlyBaseID:FBgn0045759 Length:676 Species:Drosophila melanogaster
Sequence 2:NP_005242.1 Gene:FOXC2 / 2303 HGNCID:3801 Length:501 Species:Homo sapiens


Alignment Length:520 Identity:136/520 - (26%)
Similarity:193/520 - (37%) Gaps:139/520 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   239 ISNAHGMPVLNY-SSSSSSPAKSLNGSESSPPS--QNHLENKVSGSAVVGTGGSS----QQDAPS 296
            :|:.:.:.|:.| |..:...|....|..:||..  ..|.|...:|.      |.|    ....|:
Human     7 VSDPNALGVVPYLSEQNYYRAAGSYGGMASPMGVYSGHPEQYSAGM------GRSYAPYHHHQPA 65

  Fly   297 TPDTTKKSGTRRPEKPALSYINMIGHAIKESPTGKLTLSEIYAYLQKSYEFFRGPYVGWKNSVRH 361
            .|        :...||..|||.:|..||:.:|..|:||:.||.::...:.|:|....||:||:||
Human    66 AP--------KDLVKPPYSYIALITMAIQNAPEKKITLNGIYQFIMDRFPFYRENKQGWQNSIRH 122

  Fly   362 NLSLNECFKKLPKGMGVGKPGKGNYWTIDENSAHLFEDEGSLRRRPR----------GYRSKIKV 416
            ||||||||.|:|:  ...|||||:|||:|.:|.::||:...||||.|          ..|:.:|.
Human   123 NLSLNECFVKVPR--DDKKPGKGSYWTLDPDSYNMFENGSFLRRRRRFKKKDVSKEKEERAHLKE 185

  Fly   417 KPYAGHANGYYASGYGDAGMDN------GNYYASPAF--------ASYDYSAAG---ATGVSPAG 464
            .|.|............||..:.      .:..||||.        .|.:.:..|   :...:|||
Human   186 PPPAASKGAPATPHLADAPKEAEKKVVIKSEAASPALPVITKVETLSPESALQGSPRSAASTPAG 250

  Fly   465 GQGFADPWNAHAAHSGSSSVGVGMGVGPLPQYT--NISCLAA---GGNVNGSA-----TTPPLAH 519
            ....:.|.:..||.:|            ||.::  ||..|..   ||.::..|     ..||||.
Human   251 SPDGSLPEHHAAAPNG------------LPGFSVENIMTLRTSPPGGELSPGAGRAGLVVPPLAL 303

  Fly   520 SALGMAPSASSSSSPLGAAATLQSDYAPTASLVAAGYSYATSAGSLDNGLRSISLQQLP------ 578
            ......|:|.......|..|.           .|.||..:..|.||..|....:...:|      
Human   304 PYAAAPPAAYGQPCAQGLEAG-----------AAGGYQCSMRAMSLYTGAERPAHMCVPPALDEA 357

  Fly   579 ----------GLSSIQHAQAQAQA-QAHHHHHQHHASH------------------PSHSHQGHG 614
                      .||::..|..|..| .|..||||||..|                  |..:.....
Human   358 LSDHPSGPTSPLSALNLAAGQEGALAATGHHHQHHGHHHPQAPPPPPAPQPQPTPQPGAAAAQAA 422

  Fly   615 SMHQNH-------------GTSSTTPPPSQSGGSH--GIDHSPIDRK------PAYLPPISPPPM 658
            |.:.||             ....|.|...:...||  ||::|.:...      ...||..|.||:
Human   423 SWYLNHSGDLNHLPGHTFAAQQQTFPNVREMFNSHRLGIENSTLGESQVSGNASCQLPYRSTPPL 487

  Fly   659  658
            Human   488  487

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
binNP_523950.2 Forkhead 311..399 CDD:278670 43/87 (49%)
FOXC2NP_005242.1 FH 72..160 CDD:214627 44/89 (49%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 167..208 7/40 (18%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 232..268 9/47 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 383..420 9/36 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

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