DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment bin and Foxc1

DIOPT Version :9

Sequence 1:NP_523950.2 Gene:bin / 38766 FlyBaseID:FBgn0045759 Length:676 Species:Drosophila melanogaster
Sequence 2:NP_032618.2 Gene:Foxc1 / 17300 MGIID:1347466 Length:553 Species:Mus musculus


Alignment Length:514 Identity:138/514 - (26%)
Similarity:193/514 - (37%) Gaps:161/514 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   224 GGGYMSRISTSPSQVISN-AHGMPVLNYSSSSSSPAKSLNGSESSPPSQNHLENKVSGSAVVGTG 287
            ||||.:  ..:|..|.|: ||                    :|..|                  |
Mouse    34 GGGYTA--MPAPMSVYSHPAH--------------------AEQYP------------------G 58

  Fly   288 GSSQQDAPSTPDTTKKSGTRRPEKPALSYINMIGHAIKESPTGKLTLSEIYAYLQKSYEFFRGPY 352
            ..::...|.||....|...    ||..|||.:|..||:.:|..|:||:.||.::...:.|:|...
Mouse    59 SMARAYGPYTPQPQPKDMV----KPPYSYIALITMAIQNAPDKKITLNGIYQFIMDRFPFYRDNK 119

  Fly   353 VGWKNSVRHNLSLNECFKKLPKGMGVGKPGKGNYWTIDENSAHLFEDEGSLRRRPRGYRSKIKVK 417
            .||:||:||||||||||.|:|:  ...|||||:|||:|.:|.::||: ||..||.|.::.|..||
Mouse   120 QGWQNSIRHNLSLNECFVKVPR--DDKKPGKGSYWTLDPDSYNMFEN-GSFLRRRRRFKKKDAVK 181

  Fly   418 ---------------PYAGH----ANGYYASGYGD-----------------------------A 434
                           |.||.    |....|.|...                             |
Mouse   182 DKEEKGRLHLQEPPPPQAGRQPAPAPPEQAEGSAPGPQPPPVRIQDIKTENGTCPSPPQPLSPAA 246

  Fly   435 GMDNGNYYASPAFASYDYSAAG-ATGVSPAGGQGFADPWNAHAA-------------HSGSSSVG 485
            .:.:|:....|...|.|.|::. ::|.||.|....|.|.:..||             ||...|| 
Mouse   247 ALGSGSAATVPKIESPDSSSSSLSSGSSPPGSLPSARPLSLDAAEPAPPPQPAPPPHHSQGFSV- 310

  Fly   486 VGMGVGPLPQYTNISCLAAGGNVNGSATTPPLAHSALGMAPSASSSS-----SPLGAAATLQSDY 545
                       .|| ..:..|:..|||     |....|:..||::||     .||...|     |
Mouse   311 -----------DNI-MTSLRGSPQGSA-----AELGSGLLASAAASSRAGIAPPLALGA-----Y 353

  Fly   546 AP-TASLVAAGYSYATSAGSLDNGLRSISLQQLPGLSSIQHAQAQAQAQAHHHHHQHHASHPSHS 609
            :| .:||.::..|.::||||...|.....     |......|.....|..:|.:.|..:.:.:..
Mouse   354 SPGQSSLYSSPCSQSSSAGSSGGGGGGGG-----GGGGSSSAAGTGGAATYHCNLQAMSLYAAGE 413

  Fly   610 HQGHGSMHQNHGTSSTTPPPSQSGGSHGIDHSPIDRKPAY-LPPISPPPMMVALNGGGG 667
            ..||            ...|:...||..:|    |..|.| |||.:........:||||
Mouse   414 RGGH------------LQGPAGGAGSAAVD----DPLPDYSLPPATSSSSSSLSHGGGG 456

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
binNP_523950.2 Forkhead 311..399 CDD:278670 43/87 (49%)
Foxc1NP_032618.2 Required for transcriptional activation. /evidence=ECO:0000250|UniProtKB:Q12948 1..51 7/18 (39%)
FH 78..166 CDD:214627 44/90 (49%)
Nuclear localization signal 1 (NLS 1). /evidence=ECO:0000250|UniProtKB:Q12948 78..93 8/14 (57%)
Nuclear localization signal 2 (NLS 2). /evidence=ECO:0000250|UniProtKB:Q12948 168..176 3/7 (43%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 173..326 33/170 (19%)
Required for transcriptional inhibition. /evidence=ECO:0000250|UniProtKB:Q12948 217..366 37/171 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 356..393 10/41 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 420..466 14/41 (34%)
Required for transcriptional activation. /evidence=ECO:0000250|UniProtKB:Q12948 466..553
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG2294
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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