DRSC/TRiP Functional Genomics Resources

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Protein Alignment bin and Foxc2

DIOPT Version :9

Sequence 1:NP_523950.2 Gene:bin / 38766 FlyBaseID:FBgn0045759 Length:676 Species:Drosophila melanogaster
Sequence 2:NP_001095150.1 Gene:Foxc2 / 171356 RGDID:621703 Length:494 Species:Rattus norvegicus


Alignment Length:502 Identity:134/502 - (26%)
Similarity:187/502 - (37%) Gaps:158/502 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   239 ISNAHGMPVLNY-SSSSSSPAKSLNGSESSPPS--QNHLENKVSGSAVVGTGGSSQQDAPSTPDT 300
            :|:.:.:.|:.| |..:...|....|..:||..  ..|.|...:|   :|...:.....|:.|  
  Rat     7 VSDPNALGVVPYLSEQNYYRAAGSYGGMASPMGVYSGHPEQYGAG---MGRSYAPYHHQPAAP-- 66

  Fly   301 TKKSGTRRPEKPALSYINMIGHAIKESPTGKLTLSEIYAYLQKSYEFFRGPYVGWKNSVRHNLSL 365
                  :...||..|||.:|..||:.:|..|:||:.||.::...:.|:|....||:||:||||||
  Rat    67 ------KDLVKPPYSYIALITMAIQNAPEKKITLNGIYQFIMDRFPFYRENKQGWQNSIRHNLSL 125

  Fly   366 NECFKKLPKGMGVGKPGKGNYWTIDENSAHLFEDEGSLRRRPRGYRSKI-KVKPYAGHANGYYAS 429
            ||||.|:|:  ...|||||:|||:|.:|.::||:...||||.|..:..: |.|....|..     
  Rat   126 NECFVKVPR--DDKKPGKGSYWTLDPDSYNMFENGSFLRRRRRFKKKDVPKDKEERAHLK----- 183

  Fly   430 GYGDAGMDNGNYYASPAFASYDYSAAGA-TGVSPAGGQGFAD----------------------- 470
                        ...||      ||.|| ||...|.|...|:                       
  Rat   184 ------------EPPPA------SAKGAPTGTPVADGPKEAEKKVVVKSEAASPALPVITKVETL 230

  Fly   471 -PWNA-HAAHSGSSSVGVGMGVGPLPQY----------------TNISCLAAGGNVNGSA----- 512
             |..| .|:...|:|...|...|.||::                ..:.....||:::.:|     
  Rat   231 SPEGALQASPRSSASTPAGSPDGSLPEHHAAAPNGLPGFSVETIMTLRTSPPGGDLSPAAARAGL 295

  Fly   513 TTPPLA--HSALGMAPSASSSSSPLGAAATLQSDYAPTASLVAAGYSYATSAGSLDNGLR----- 570
            ..||||  ::|...|..|...:..|.||.             :|||..:..|.||..|..     
  Rat   296 VVPPLALPYAAAPPAAYAQPCAQGLEAAG-------------SAGYQCSMRAMSLYTGAERPAHV 347

  Fly   571 ------SISLQQLPG-----LSSIQHAQAQAQA-QAHHHHHQHHASHPSHSHQGHGSMHQNHGTS 623
                  ..:|...|.     |.::..|..|..| .|..||||||    ||.|             
  Rat   348 CVPPALDEALSDHPSGPGSPLGALNLAAGQEGALGASGHHHQHH----SHLH------------- 395

  Fly   624 STTPPPSQSGGSHGIDHSPIDRKPAYLPPISPPPMMVA----LNGGG 666
            ...|||:..                  ||.:|.|...|    ||.||
  Rat   396 PQAPPPAPQ------------------PPPAPQPATQATSWYLNHGG 424

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
binNP_523950.2 Forkhead 311..399 CDD:278670 43/87 (49%)
Foxc2NP_001095150.1 FH_FOXC1 66..158 CDD:410818 45/101 (45%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 166..213 15/69 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 233..267 8/33 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 380..422 20/76 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG2294
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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