DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment bin and Foxd1

DIOPT Version :9

Sequence 1:NP_523950.2 Gene:bin / 38766 FlyBaseID:FBgn0045759 Length:676 Species:Drosophila melanogaster
Sequence 2:NP_599164.2 Gene:Foxd1 / 171299 RGDID:621712 Length:455 Species:Rattus norvegicus


Alignment Length:453 Identity:123/453 - (27%)
Similarity:170/453 - (37%) Gaps:137/453 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   199 LLTSQEQAGQQQPQQLPAQQLQHSPGGGYMSRISTSPSQVISNAHGMPVLNYSSSSSSPAKSLNG 263
            ||.|:..|....|...||      ||.|                         |...|.|.:..|
  Rat    74 LLASRPAASPAPPGPAPA------PGAG-------------------------SGGCSGAGAGGG 107

  Fly   264 SESSPPSQNHLENKVSGSAVVGTGGSSQQDAPSTPDTTKKSGTRRPEKPALSYINMIGHAIKESP 328
            :...          |...|..|.||||:...               .||..|||.:|..||.:||
  Rat   108 AGGG----------VGAGAGTGGGGSSKNPL---------------VKPPYSYIALITMAILQSP 147

  Fly   329 TGKLTLSEIYAYLQKSYEFFRGPYVGWKNSVRHNLSLNECFKKLPKGMGVGKPGKGNYWTIDENS 393
            ..:||||||..::...:.::|..:..|:||:|||||||:||.|:|:  ..|.||||||||:|..|
  Rat   148 KKRLTLSEICEFISGRFPYYREKFPAWQNSIRHNLSLNDCFVKIPR--EPGNPGKGNYWTLDPES 210

  Fly   394 AHLFEDEGSLRRRPRGYRSKIKVKPYAG------HANGYYAS------------------GYGDA 434
            |.:|::...||||.|..|..: :.|:|.      ...|..||                  |||..
  Rat   211 ADMFDNGSFLRRRKRFKRQPL-LAPHAAAEALLLRGAGPAASAGDPGAALFPPPPPPPACGYGAY 274

  Fly   435 GMDNGNYYASPAFASYDYSAAGATGVS---------------PAG-----------------GQG 467
            |...|......|..|..::||.|...:               |.|                 ...
  Rat   275 GCAYGLQLPPCAPPSALFAAAAAAAAAAFHPHSPPPPPPPPPPPGAAAELARTAFGYRPHALAAA 339

  Fly   468 FADPWNAHAAHSGSSSVGVGMGVGPLPQYTNISCLAAGGNVNGSATTPPLAHSALGMAPSASSSS 532
            ...|..|.|..:|      |.|...|.: :..|..:..|...|.||..  ||:    :|.|:|.:
  Rat   340 LPGPLQAAAVKAG------GPGTAALAR-SPFSIESLIGRTRGPATAG--AHA----SPGATSGT 391

  Fly   533 S--PLGAAATLQSDYAP----TASLVAAGYSYATSAGSLDNGLRSISLQQLPGLSSIQHAQAQ 589
            :  |.|....:|:...|    |.|||.|.   |.:|.|:.:.....:|.|...|||:::..|:
  Rat   392 APGPGGGGCAVQAAAGPAVALTRSLVVAA---AAAASSVSSSAALGTLHQGTALSSVENFTAR 451

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
binNP_523950.2 Forkhead 311..399 CDD:278670 44/87 (51%)
Foxd1NP_599164.2 FH_FOXD1_D2-like 130..228 CDD:410820 49/99 (49%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG2294
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.900

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