DRSC/TRiP Functional Genomics Resources

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Protein Alignment bin and Foxd1

DIOPT Version :10

Sequence 1:NP_523950.2 Gene:bin / 38766 FlyBaseID:FBgn0045759 Length:676 Species:Drosophila melanogaster
Sequence 2:NP_599164.2 Gene:Foxd1 / 171299 RGDID:621712 Length:455 Species:Rattus norvegicus


Alignment Length:453 Identity:123/453 - (27%)
Similarity:170/453 - (37%) Gaps:137/453 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   199 LLTSQEQAGQQQPQQLPAQQLQHSPGGGYMSRISTSPSQVISNAHGMPVLNYSSSSSSPAKSLNG 263
            ||.|:..|....|...||      ||.|                         |...|.|.:..|
  Rat    74 LLASRPAASPAPPGPAPA------PGAG-------------------------SGGCSGAGAGGG 107

  Fly   264 SESSPPSQNHLENKVSGSAVVGTGGSSQQDAPSTPDTTKKSGTRRPEKPALSYINMIGHAIKESP 328
            :...          |...|..|.||||:...               .||..|||.:|..||.:||
  Rat   108 AGGG----------VGAGAGTGGGGSSKNPL---------------VKPPYSYIALITMAILQSP 147

  Fly   329 TGKLTLSEIYAYLQKSYEFFRGPYVGWKNSVRHNLSLNECFKKLPKGMGVGKPGKGNYWTIDENS 393
            ..:||||||..::...:.::|..:..|:||:|||||||:||.|:|:  ..|.||||||||:|..|
  Rat   148 KKRLTLSEICEFISGRFPYYREKFPAWQNSIRHNLSLNDCFVKIPR--EPGNPGKGNYWTLDPES 210

  Fly   394 AHLFEDEGSLRRRPRGYRSKIKVKPYAG------HANGYYAS------------------GYGDA 434
            |.:|::...||||.|..|..: :.|:|.      ...|..||                  |||..
  Rat   211 ADMFDNGSFLRRRKRFKRQPL-LAPHAAAEALLLRGAGPAASAGDPGAALFPPPPPPPACGYGAY 274

  Fly   435 GMDNGNYYASPAFASYDYSAAGATGVS---------------PAG-----------------GQG 467
            |...|......|..|..::||.|...:               |.|                 ...
  Rat   275 GCAYGLQLPPCAPPSALFAAAAAAAAAAFHPHSPPPPPPPPPPPGAAAELARTAFGYRPHALAAA 339

  Fly   468 FADPWNAHAAHSGSSSVGVGMGVGPLPQYTNISCLAAGGNVNGSATTPPLAHSALGMAPSASSSS 532
            ...|..|.|..:|      |.|...|.: :..|..:..|...|.||..  ||:    :|.|:|.:
  Rat   340 LPGPLQAAAVKAG------GPGTAALAR-SPFSIESLIGRTRGPATAG--AHA----SPGATSGT 391

  Fly   533 S--PLGAAATLQSDYAP----TASLVAAGYSYATSAGSLDNGLRSISLQQLPGLSSIQHAQAQ 589
            :  |.|....:|:...|    |.|||.|.   |.:|.|:.:.....:|.|...|||:::..|:
  Rat   392 APGPGGGGCAVQAAAGPAVALTRSLVVAA---AAAASSVSSSAALGTLHQGTALSSVENFTAR 451

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
binNP_523950.2 FH_FOX 312..391 CDD:469596 39/78 (50%)
Foxd1NP_599164.2 FH_FOXD1_D2-like 130..228 CDD:410820 49/99 (49%)

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