DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment bin and foxl2

DIOPT Version :9

Sequence 1:NP_523950.2 Gene:bin / 38766 FlyBaseID:FBgn0045759 Length:676 Species:Drosophila melanogaster
Sequence 2:XP_004917868.1 Gene:foxl2 / 100486124 XenbaseID:XB-GENE-486612 Length:326 Species:Xenopus tropicalis


Alignment Length:433 Identity:116/433 - (26%)
Similarity:165/433 - (38%) Gaps:143/433 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   230 RISTSPSQVISNAHGMPVLNYSSSSSSPAKSLNGSESSPPSQNHLENKVSGSAVVGTGGS--SQQ 292
            |.|.:|:...|  .|...||..|...:..:|        |.|        |:..:.|..|  :::
 Frog     2 RSSCAPTHYCS--PGCYCLNQGSDRMASFQS--------PEQ--------GTVALMTHNSNGNKE 48

  Fly   293 DAPSTPDTTKKSGTRRP---EKPALSYINMIGHAIKESPTGKLTLSEIYAYLQKSYEFFRGPYVG 354
            ...|..|...:.|..:|   :||..||:.:|..||:||...:||||.||.|:...:.|:.....|
 Frog    49 AERSKEDLLPEKGQEKPDPSQKPPYSYVALIAMAIRESAEKRLTLSAIYQYIISKFPFYEKNKKG 113

  Fly   355 WKNSVRHNLSLNECFKKLPKGMGVGKPGKGNYWTIDENSAHLFEDEGSLRRRPRGYRSKIKVKPY 419
            |:||:||||||||||.|:|:..|..:  ||||||:|.....:|| :|:.|||   .|.|...:|.
 Frog   114 WQNSIRHNLSLNECFIKVPREGGGER--KGNYWTLDPACEDMFE-KGNYRRR---RRMKRPFRPP 172

  Fly   420 AGHANGYYASGYGDAGMDNGNYYASPAFASYDYSAAGATGVSPAGGQGFADPWNAHAAHSGSSSV 484
            ..|    :.:|......|...|.:.|.:....:               ..:.|            
 Frog   173 PTH----FQAGKSLFSSDTYGYLSPPKYLQSTF---------------MNNSW------------ 206

  Fly   485 GVGMGVGPLPQ------YTNISCLAAGGNVNGSATTPPLAHSALGMAPSASSSSSPLGAAATLQS 543
                   ||.|      ||  ||..|||||:      |:....|    |||||.||.....::  
 Frog   207 -------PLAQPPAPMSYT--SCQMAGGNVS------PVNVKGL----SASSSYSPYSRVQSM-- 250

  Fly   544 DYAPTASLVAAGYSYATSAGSLDNGLRSISLQQLPGLSSIQHAQAQAQAQAHHHH-HQHHASHPS 607
                  ||.:...||        ||:                        :|||| |.|||..  
 Frog   251 ------SLPSMVNSY--------NGM------------------------SHHHHPHAHHAQQ-- 275

  Fly   608 HSHQGHGSMHQNHGTSSTTPPPSQSGGSHGIDHSPIDRKPAYL 650
                          .|..:|.|:.....:|:..: ..|:|:.|
 Frog   276 --------------LSPASPAPAPPAPPNGVQFT-CARQPSDL 303

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
binNP_523950.2 Forkhead 311..399 CDD:278670 42/87 (48%)
foxl2XP_004917868.1 Forkhead 69..155 CDD:365978 41/87 (47%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.