DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG10064 and SWD3

DIOPT Version :10

Sequence 1:NP_648065.1 Gene:CG10064 / 38761 FlyBaseID:FBgn0035724 Length:742 Species:Drosophila melanogaster
Sequence 2:NP_009734.1 Gene:SWD3 / 852472 SGDID:S000000379 Length:315 Species:Saccharomyces cerevisiae


Alignment Length:361 Identity:75/361 - (20%)
Similarity:133/361 - (36%) Gaps:106/361 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   253 GTHNPRKPTGRDCNRYVNGVRALYVLEGGRLLIGAGNGDIELVEERTDVPLINFRDYPGPTWPYL 317
            ||.|..|.|   |.:.....:.|.:.:|..:||    .||.                       .
Yeast     9 GTQNGLKAT---CAKISPDGQFLAITQGLNILI----YDIN-----------------------R 43

  Fly   318 RTLKKTHVSGRISSF-----------VRSKTDMFYICTDTNEI----YGLNIKTWVLKLLRTCHT 367
            ||:.:|.|:.....|           :.:.:|.|.:     ||    ||| :.|::      .||
Yeast    44 RTVSQTLVTSHARPFSELCWSPDGQCIATASDDFSV-----EIIHLSYGL-LHTFI------GHT 96

  Fly   368 KSVYCITFPKNYSGVFATSGKECIRIWSSGRKQELLRIMVYNFNCACVRFTHDGTSIVSVWN-DG 431
            ..|..:||.:..:.:|.:|..|.|:||.:.....:..|..::.....|....:.:||:|..: ||
Yeast    97 APVISLTFNRKGNLLFTSSMDESIKIWDTLNGSLMKTISAHSEAVVSVDVPMNDSSILSSGSYDG 161

  Fly   432 IIRAFTPITGRLIYAIPNAHNKG---------CSALAVASSGRLIVTGGIEGQVRVW-------- 479
            :||.|...||..:..:  .::|.         .|.:..:.:.|.::...::|.|::|        
Yeast   162 LIRIFDAETGHCLKTL--TYDKDWKRENGVVPISQVKFSENARYLLVKSLDGVVKIWDCIGGCVV 224

  Fly   480 ---KIDPYRQDLVGVLKDHSGPITSLDINYLDTE------VISACTDGSCVIW--DIKRMTRKQV 533
               ::.|..:   |||....|      :::|:.|      |||...:|....|  |.|.:     
Yeast   225 RTFQVQPLEK---GVLHHSCG------MDFLNPEDGSTPLVISGYENGDIYCWNSDTKSL----- 275

  Fly   534 VTANTQFMSASYFPTGVQVITCGSDGRIIYWMVYNG 569
                .|.:..|.:.....|::....|.|:..:..||
Yeast   276 ----LQLLDGSLYHHSSPVMSIHCFGNIMCSLALNG 307

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG10064NP_648065.1 WD40 <59..482 CDD:441893 54/264 (20%)
WD40 repeat 65..106 CDD:293791
WD40 repeat 111..151 CDD:293791
WD40 repeat 159..186 CDD:293791
WD40 366..650 CDD:238121 50/233 (21%)
WD40 repeat 370..407 CDD:293791 10/36 (28%)
WD40 repeat 412..449 CDD:293791 11/37 (30%)
WD40 repeat 456..494 CDD:293791 9/48 (19%)
WD40 repeat 499..535 CDD:293791 9/43 (21%)
WD40 repeat 541..576 CDD:293791 6/29 (21%)
WD40 repeat 583..617 CDD:293791
WD40 repeat 625..651 CDD:293791
SWD3NP_009734.1 WD40 repeat 17..53 CDD:293791 12/65 (18%)
WD40 <21..293 CDD:441893 65/330 (20%)
WD40 repeat 59..94 CDD:293791 8/46 (17%)
WD40 repeat 99..135 CDD:293791 9/35 (26%)
WD40 repeat 142..178 CDD:293791 11/37 (30%)
WD40 repeat 192..228 CDD:293791 5/35 (14%)
WD40 repeat 236..284 CDD:293791 14/62 (23%)
WD40 repeat 290..312 CDD:293791 5/18 (28%)
Blue background indicates that the domain is not in the aligned region.

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