DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG10064 and cfap52

DIOPT Version :9

Sequence 1:NP_648065.1 Gene:CG10064 / 38761 FlyBaseID:FBgn0035724 Length:742 Species:Drosophila melanogaster
Sequence 2:NP_001106545.1 Gene:cfap52 / 100127736 XenbaseID:XB-GENE-989292 Length:617 Species:Xenopus tropicalis


Alignment Length:640 Identity:233/640 - (36%)
Similarity:366/640 - (57%) Gaps:40/640 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 RAIFGINGKVENGVRQHPVTGSIIFALGNKIGIADYKKNTQEFVAGHTNTISCLDLSKSGKYMAS 78
            :.|.|.||.|.:|:..||....:|:.||..:.|.:.....|:|:.||||.:||:..|:||:|:||
 Frog    13 QGIIGFNGHVPSGLISHPDREHLIYPLGCTVIIENLSSRKQQFLQGHTNNVSCVAASRSGRYLAS 77

  Fly    79 GQINHMGFRGYVIIWNYDQRKEIARHDLHKVSVQAICFTAQDRCVVSIGGVDDGSVIVFDMEAFS 143
            ||:.:|||:..:::|:|.:|:..|:..||||.|:|:.|:..|..:||:||.|||||:|:::....
 Frog    78 GQVTYMGFKADILLWDYGRREACAKLTLHKVKVEALAFSPNDLYLVSLGGQDDGSVVVWNVAKRE 142

  Fly   144 PICQTPASRAISGNALTVRPLHNNPYFFVTAGDRHLRLWSILREEKKLYVQDVLMASKTRVFYCA 208
            .||.:|||...||:|.|:...:|:...|:|.|:..||:|.:....:|:...:..:....||..|.
 Frog   143 AICGSPASSLSSGHATTIIFANNSDDVFMTGGNGTLRVWDVDLPNRKMRPTECQLGQMKRVVTCL 207

  Fly   209 RINKTDEFAYLGTGTGDIVKIVLNCCDRDHVSKQGSTSCILGAFGTHNPRKPTGRDCNRYVNGVR 273
            ::.:.|...|.||.:|||:.|             .:.|.:|.:|.   |:|      .::..||.
 Frog   208 QVAEDDSCFYCGTSSGDILTI-------------NTKSKLLSSFA---PQK------GKFSLGVT 250

  Fly   274 ALYVLEGGRLLIGAGNGDIELVEERTDVPLINFRDYPGPTWPYLRTLKKTHVSGRISSF-VRSKT 337
            ||.:|:.|.||:|:|:|.:.|.:              ||.:   :..|...:.|.::|. :|.:.
 Frog   251 ALRLLKTGELLVGSGDGKLALCK--------------GPNY---KAAKTVQLQGSVTSISLRGQG 298

  Fly   338 DMFYICTDTNEIYGLNIKTWVLKLLRTCHTKSVYCITFPKNYSGVFATSGKECIRIWSSGRKQEL 402
            ..|::.|...:||..:...:..:|:.|||::::..|.||...|.:|||..|..||:|.:...:||
 Frog   299 HQFFVGTGGAQIYRFSYPEFKEELIATCHSEAINDIAFPFGTSELFATCSKNDIRVWHTATHKEL 363

  Fly   403 LRIMVYNFNCACVRFTHDGTSIVSVWNDGIIRAFTPITGRLIYAIPNAHNKGCSALAVASSGRLI 467
            |||.|.|..|..:.|..||.||:|.||||.||||.|.:|||:|.|.|||:.|.:|:|..|..:.|
 Frog   364 LRITVPNMTCLAIDFMRDGKSIISAWNDGRIRAFMPESGRLMYCIENAHSMGVTAIAATSDCKRI 428

  Fly   468 VTGGIEGQVRVWKIDPYRQDLVGVLKDHSGPITSLDINYLDTEVISACTDGSCVIWDIKRMTRKQ 532
            |:||.|||||:|:|....|.||..:|:|...:|.:.:...:.|.::|.:||:|:||||.|.||.|
 Frog   429 VSGGGEGQVRIWEISKETQRLVQSMKEHKSSVTCIKLKGNNRECLTASSDGTCIIWDIVRFTRLQ 493

  Fly   533 VVTANTQFMSASYFPTGVQVITCGSDGRIIYWMVYNGALIRELTASKKSSVNCLAINETGDYFIT 597
            :|.:||.|....|.|...|.:|.|:|.::.||.|::|:.||||..||..::|.:.|.:.|.:|:|
 Frog   494 MVLSNTLFRCVCYHPEEFQFVTSGTDRKVGYWEVFDGSAIRELEGSKSGAINGMDICDQGAHFVT 558

  Fly   598 VGSDLQVKLWDYNSGAVVGIGSEHASSVISCAYSPCMTMFVTGSTDGSLIIWDVP 652
            .|.|..||:||||.|.|..:|..|:.::......|.....::.||||:::.||.|
 Frog   559 GGDDKLVKVWDYNEGEVTHVGIGHSGNITRLKICPLSKYIISVSTDGAILCWDYP 613

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG10064NP_648065.1 WD40 <25..188 CDD:295369 64/162 (40%)
WD40 33..434 CDD:225201 133/401 (33%)
WD40 repeat 65..106 CDD:293791 17/40 (43%)
WD40 repeat 111..151 CDD:293791 17/39 (44%)
WD40 repeat 159..186 CDD:293791 8/26 (31%)
WD40 280..652 CDD:225201 141/372 (38%)
WD40 366..650 CDD:238121 119/283 (42%)
WD40 repeat 370..407 CDD:293791 16/36 (44%)
WD40 repeat 412..449 CDD:293791 21/36 (58%)
WD40 repeat 456..494 CDD:293791 17/37 (46%)
WD40 repeat 499..535 CDD:293791 14/35 (40%)
WD40 repeat 541..576 CDD:293791 13/34 (38%)
WD40 repeat 583..617 CDD:293791 15/33 (45%)
WD40 repeat 625..651 CDD:293791 6/25 (24%)
cfap52NP_001106545.1 WD40 56..395 CDD:392136 127/377 (34%)
WD40 repeat 63..105 CDD:293791 17/41 (41%)
WD40 repeat 111..152 CDD:293791 18/40 (45%)
WD40 repeat 157..197 CDD:293791 10/39 (26%)
WD40 repeat 205..242 CDD:293791 13/52 (25%)
WD40 327..611 CDD:238121 119/283 (42%)
WD40 repeat 332..368 CDD:293791 16/35 (46%)
WD40 repeat 373..410 CDD:293791 21/36 (58%)
WD40 repeat 417..455 CDD:293791 17/37 (46%)
WD40 repeat 460..496 CDD:293791 14/35 (40%)
WD40 repeat 502..537 CDD:293791 13/34 (38%)
WD40 repeat 544..580 CDD:293791 15/35 (43%)
WD40 repeat 586..612 CDD:293791 6/25 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 155 1.000 Domainoid score I4191
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H12416
Inparanoid 1 1.050 440 1.000 Inparanoid score I1624
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D131055at33208
OrthoFinder 1 1.000 - - FOG0006987
OrthoInspector 1 1.000 - - oto102515
Panther 1 1.100 - - LDO PTHR13720
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X5877
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
88.160

Return to query results.
Submit another query.