DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sgl and Plce1

DIOPT Version :9

Sequence 1:NP_476980.1 Gene:sgl / 38760 FlyBaseID:FBgn0261445 Length:476 Species:Drosophila melanogaster
Sequence 2:NP_446210.1 Gene:Plce1 / 114633 RGDID:69424 Length:2281 Species:Rattus norvegicus


Alignment Length:326 Identity:70/326 - (21%)
Similarity:112/326 - (34%) Gaps:104/326 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    43 SDKLPIY------------EPGLDEVVKKCRNVNLFFST---------DIETAIKEADLIFISVN 86
            |:..|:|            :|.||.:.:...::.||..:         .|..||..|.::     
  Rat  1230 SESTPLYTNLTIEENTNDLQPDLDLLTRNVSDLGLFMKSKQQLSDNQRQISDAIAAASIV----- 1289

  Fly    87 TPTKTCGNGKGRAADLKYVESAARMI--AEIAQSNKIVV----EKSTVPVRAAESIMHILRANQK 145
                  .||.|       :||.:..|  ..|.|.|..:|    |..|.     :.|:.|:: ..:
  Rat  1290 ------TNGTG-------IESTSLGIFGVGILQLNDFLVNCQGEHCTY-----DEILSIIQ-KFE 1335

  Fly   146 PGI---HYDILSNPEFLAEGTAINDLLNADRVLIGGEETPEGHQAVE-KLSWIY---EHWIPKQN 203
            |.|   |..:||     .||.| ..|::.|......:|:.|..:.:: .||:.|   .|    ..
  Rat  1336 PNISMCHQGLLS-----FEGFA-RFLMDKDNFASKNDESRENKKDLQLPLSYYYIESSH----NT 1390

  Fly   204 ILTTNTWSSELSKLAANAFLAQRISSI--------NSLSAVCE----ATGADVSEVARAVGLDSR 256
            .||.:....|.|....:..|.|...||        :.:..:..    .|.....||..|:...:.
  Rat  1391 YLTGHQLKGESSVELYSQVLLQGCRSIELDCWDGDDGMPIIYHGHTLTTKIPFKEVVEAIDRSAF 1455

  Fly   257 IGSKFLQASVGFGGSCFQKDILNLIYICENLNLPEVAAYWQQVIDMNEYQKRRFSQKII-ESLFN 320
            |.|                |:..:|.|..:.:||       |...|.|..|..|.:|:: :.||.
  Rat  1456 ITS----------------DLPIIISIENHCSLP-------QQRKMAEIFKSVFGEKLVAKFLFE 1497

  Fly   321 T 321
            |
  Rat  1498 T 1498

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sglNP_476980.1 PLN02353 1..459 CDD:177986 70/326 (21%)
Plce1NP_446210.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..68
GRF CDC25 domain 529..740
RasGEF 531..710 CDD:279011
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1050..1146
PLN02952 1299..1962 CDD:178538 53/239 (22%)
EF-hand_like <1309..1360 CDD:286375 16/62 (26%)
PI-PLCc_epsilon 1372..1812 CDD:176538 32/154 (21%)
PIPLC X domain 1373..1521 32/153 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1547..1572
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1664..1703
PIPLC Y domain 1734..1824
C2 domain 1839..1923
C2_PLC_like 1847..1963 CDD:175974
RA1 domain 1989..2093
RA2 domain 2114..2217
PLC_epsilon_RA 2116..2215 CDD:176375
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 2239..2281
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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