DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG10077 and ddx42

DIOPT Version :9

Sequence 1:NP_001261491.1 Gene:CG10077 / 38756 FlyBaseID:FBgn0035720 Length:818 Species:Drosophila melanogaster
Sequence 2:NP_001032894.2 Gene:ddx42 / 503932 ZFINID:ZDB-GENE-050706-53 Length:908 Species:Danio rerio


Alignment Length:622 Identity:226/622 - (36%)
Similarity:338/622 - (54%) Gaps:52/622 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly   104 LPKIVWSEVNLTPFRKNFYKPCDSVLARTVGETETFLTSNEITIKGDQVPTPSIEFEEGGFPDYV 168
            ||.|..||::.:||.||||...:.:.:.|..|.........:.:.|...|.|:..|...||.:.:
Zfish   202 LPPIDHSEIDYSPFEKNFYNEHEEISSLTGAEVVELRRKLNLKVSGAAPPKPATSFAHFGFDEQL 266

  Fly   169 MNEIRKQGFAKPTAIQAQGWPIAMSGRDLVGVAQTGSGKTLAYVLPAVVHINNQPRLERGDGPIA 233
            |::|||..:.:||.||.||.|||:||||.:|:|:||||||.|::.|.:|||.:|..||.|:||||
Zfish   267 MHQIRKSEYTQPTPIQCQGVPIALSGRDAIGIAKTGSGKTAAFIWPILVHIMDQKELEPGEGPIA 331

  Fly   234 LVLAPTRELAQQIQQVAIEFGSNTHVRNTCIFGGAPKGQQARDLERGVEIVIATPGRLIDFLERG 298
            :::.|||||.|||......||....:|:..::||....:||:.|:.|.|||:.|||||||.:::.
Zfish   332 VIVCPTRELCQQIHAECKRFGKAYGLRSVAVYGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKK 396

  Fly   299 TTSLKRCTYLVLDEADRMLDMGFEPQIRKIMQQIRPDRQVLMWSATWPKEVRQLAEEFLNNYIQV 363
            .|||:|.|:||.||||||.|||||.|:|.|...:|||||.|::|||:.|::.:||.:.|.:.|:|
Zfish   397 ATSLQRVTFLVFDEADRMFDMGFEYQVRSIASHVRPDRQTLLFSATFRKKIEKLARDILVDPIRV 461

  Fly   364 NIGSLSLSANHNILQIVDVCDE-NEKLMKLIKLLTDISAENETKTIIFVETKKRVDEITRNISRQ 427
            ..|.:. .||.:|.|||:|... .:|...|.:.|.:.::..  ..::||..|...:|:..|:.::
Zfish   462 VQGDIG-EANEDITQIVEVLQSGQDKWGWLTRRLVEFTSAG--SVLVFVTKKANCEELATNLIQE 523

  Fly   428 GWRACAIHGDKSQQERDFVLSSFRNGRHSILVATDVAARGLDVDDVKFVINYDYPSNSEDYVHRI 492
            |:....:|||..|.||:.|::.|:.....:||||||||||||:..::.|:|||...:.:.:.|||
Zfish   524 GYSLGLLHGDMDQSERNKVIADFKKKNLPVLVATDVAARGLDIPSIRTVVNYDVARDIDTHTHRI 588

  Fly   493 GRTGRSNNTGTAYTLFTHSNANKANDLIQVLREANQTINPKLMNMAMNGGYNKRGGGMGGGYRGG 557
            |||||:...|.||||.|..:.:.|.||::.|..|||:::..|:::||...:.::....||     
Zfish   589 GRTGRAGEKGVAYTLLTTKDTSFAGDLVRNLEGANQSVSKDLLDLAMQNPWFRKSRFKGG----- 648

  Fly   558 NGYQGRNPQMGGGYNGGNNYRNNNGPGATMNRNSFNGGS-AGGPPRFDQKPRTSPPNQGGQGGYR 621
               :|:...:||   ||..||...|.|:..:..|  ||| |.....::    |..|:.|..|...
Zfish   649 ---KGKKINIGG---GGLGYRERPGLGSECSERS--GGSIAAALGNYE----TFKPSTGAMGDRM 701

  Fly   622 GQGGGGYQGQQQQQQQQNGGVPFSRFNPNAACFEPNKPQNGPGSGPPQAQHQQQQQAQAAQQQHL 686
            ......:|.|.:.......|||     |...      .::...||...|                
Zfish   702 SALKQAFQAQYKNHFVAASGVP-----PKLT------TKSSSSSGWTSA---------------- 739

  Fly   687 LPDASVQAAMTAANYGVDQKRSRFSPYNMNFANMPPP 723
               .|:.:..|.|..|.|:....|||.:.:..:||||
Zfish   740 ---GSLSSLPTGAPEGPDRPHLSFSPSSSSSFSMPPP 773

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG10077NP_001261491.1 PTZ00110 49..544 CDD:240273 185/440 (42%)
DEADc 159..364 CDD:238167 103/204 (50%)
HELICc 375..507 CDD:238034 49/132 (37%)
ddx42NP_001032894.2 DEADc 257..461 CDD:238167 103/203 (51%)
DEXDc 270..476 CDD:214692 104/206 (50%)
HELICc 472..603 CDD:238034 49/132 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D245118at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.920

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