DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG10077 and glh-4

DIOPT Version :9

Sequence 1:NP_001261491.1 Gene:CG10077 / 38756 FlyBaseID:FBgn0035720 Length:818 Species:Drosophila melanogaster
Sequence 2:NP_491207.3 Gene:glh-4 / 171941 WormBaseID:WBGene00001601 Length:1156 Species:Caenorhabditis elegans


Alignment Length:635 Identity:177/635 - (27%)
Similarity:277/635 - (43%) Gaps:116/635 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 NAFGGGGGG-----GAGGLAGGMVPNRMGGGAPGGGPGGA------GMFQRNRSAP----YPGFN 58
            :|||..|.|     |.|...|....|:.|....|..|.|.      |...:....|    :|..|
 Worm   533 SAFGAAGFGSSSNFGNGNTFGEPSDNQRGNWDGGERPRGCHNCGEEGHISKECDKPKVPRFPCRN 597

  Fly    59 ----GHGPANGGQRRMNGGGPSMGPGGPRNQDGFGGQ-----------NGGQRSSNHGAHLPKIV 108
                ||..::..|.|:        |.||....|..|.           .|..|:.....|..|..
 Worm   598 CEQLGHFASDCDQPRV--------PRGPCRNCGIEGHFAVDCDQPKVPRGPCRNCGQEGHFAKDC 654

  Fly   109 WSE-VNLTP-----------------------FRKNF-------YKPCDSVLARTVGETETFLTS 142
            .:| |.:.|                       .:.||       :.|.|.:....|...:.....
 Worm   655 QNERVRMEPTEPCRRCAEEGHWGYECPTRPKDLQGNFLESYDFVFTPDDKMFEDAVNNDDKIDFD 719

  Fly   143 NEITIKGDQVPTPSIEFEEGG--FPDYVMNEIRKQGFAKPTAIQ-AQGWPIAMSGRDLVGVAQTG 204
            .::.....:|..|.:...:|.  .|..:.:.:::....:||.|| |..:|| |.|.|:|..|.||
 Worm   720 QKVVASTGKVEIPDMASFDGFKILPQDLHDNLKRMKMNRPTPIQRASFFPI-MHGNDVVACAHTG 783

  Fly   205 SGKTLAYVLPAVVHINNQPRLERG-----DGPIALVLAPTRELAQQIQQVAIEFGSNTHVRNTCI 264
            ||||||:::|.|:.:..:...:|.     ..|..|::||||||..|....|.:....|.::....
 Worm   784 SGKTLAFLIPFVIKLMEEFEKDRDVTDEKPSPRLLIVAPTRELVNQTFTTARQLTYETGLKCGLA 848

  Fly   265 FGGAPKGQQARDLE--RGVEIVIATPGRLIDFLERGTTSLKRCTYLVLDEADRMLDMG-FEPQIR 326
            |||..:....:.|.  ..:.|::||.|||.||:..|..||.:..|:||||||||:|.. |..::.
 Worm   849 FGGYSRNANVQHLRSFSQLNILVATMGRLQDFVNAGEVSLSKMKYIVLDEADRMVDSNDFGEEVS 913

  Fly   327 KIMQQIRP---DRQVLMWSATWPKEVR--QLAEEFLNNYIQVNIGSLSLSANHNILQIVDVCDEN 386
            ||:..  |   .:|.:::||::.::::  .|.:.....|..:.:.... :||..|.|.:......
 Worm   914 KIIGS--PGERTQQTVLFSASFSEDLQSDDLPKFVKEGYTMLQVDKFG-TANEKIDQKILPVPRT 975

  Fly   387 EK---LMKL-------IKLLTDISAENETKTIIFVETKKRVDEITRNISRQGWRACAIHGDKSQQ 441
            ||   :.||       :.||.|...|.: ||:|||.:.|..|.:...||..|....::|..::|:
 Worm   976 EKRDAIYKLLGIDENTVTLLPDAPIEKQ-KTLIFVNSVKFCDTLAALISSAGVSTISMHSYQNQE 1039

  Fly   442 ERDFVLSSFRNGRHSILVATDVAARGLDVDDVKFVINYDYPSNS--EDYVHRIGRTGRSNNTGTA 504
            :||..|..||.|::..:||::|.||||::..:..|:|||.|..:  ::||:|||||||:..|||:
 Worm  1040 QRDRTLDDFRRGKYQCMVASNVCARGLNIAGLDHVVNYDMPDKNGFDEYVNRIGRTGRAGFTGTS 1104

  Fly   505 YTLFTHSNANKAND------LIQVLREANQTINPKLMNMAMNGGYNKRGG 548
             |.|    .:..||      |:.:|.||.:.:...|...|   |:.:.||
 Worm  1105 -TAF----VDVENDTDIIPCLVSILNEAKKEVPEWLTEGA---GHQEEGG 1146

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG10077NP_001261491.1 PTZ00110 49..544 CDD:240273 161/578 (28%)
DEADc 159..364 CDD:238167 70/220 (32%)
HELICc 375..507 CDD:238034 52/143 (36%)
glh-4NP_491207.3 zf-CCHC 570..587 CDD:278525 2/16 (13%)
PTZ00368 572..685 CDD:173561 20/120 (17%)
zf-CCHC 616..633 CDD:278525 4/16 (25%)
zf-CCHC 639..656 CDD:278525 4/16 (25%)
P-loop_NTPase 743..938 CDD:304359 67/197 (34%)
DEXDc 751..968 CDD:214692 71/220 (32%)
HELICc 964..1104 CDD:238034 51/140 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

Return to query results.
Submit another query.