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Protein Alignment CG14820 and Cpa1

DIOPT Version :9

Sequence 1:	NP_648060.1	Gene:	CG14820 / 38754	FlyBaseID:	FBgn0035718	Length:	416	Species:	Drosophila melanogaster
Sequence 2:	NP_058694.2	Gene:	Cpa1 / 24269	RGDID:	2388	Length:	419	Species:	Rattus norvegicus

Alignment Length:	390	Identity:	139/390 - (35%)
Similarity:	223/390 - (57%)	Gaps:	34/390 - (8%)

- Green bases have known domain annotations that are detailed below.

  Fly    24 DNYKVYNVR-IDDLEQFKLLHTQERSLKLSSWREARHLGESSDIMLPPEYQKTFESLLTKHNFTY 87
            |..:|..|: ::|||.          |:|..||:|...|...|:.:|....::.::.|..|..:|
  Rat    32 DEAQVQKVKELEDLEH----------LQLDFWRDAARAGIPIDVRVPFPSIQSVKAFLEYHGISY 86

  Fly    88 NLKIDNVQTHIDAQRPKQRIT----------SMEWTQFHTLEEIYAWLDVIEDRYPDIVTPFTIG 142
            .:.|::||..:|.:  ||:::          |..:..:|||:|||.::|::...:|.:|:...||
  Rat    87 EIMIEDVQLLLDEE--KQQMSAFQARALSTDSFNYATYHTLDEIYEFMDLLVAEHPQLVSKIQIG 149

  Fly   143 NSYEGRPIRGVKISYKEGN-PAVFIESNIHAREWITSATITYFIDELL--VPRNPAVRDIAQNVD 204
            |::|||||..:|.|....| ||::|::.||:|||:|.|:..:|..::.  ..::|....:..|:|
  Rat   150 NTFEGRPIHVLKFSTGGTNRPAIWIDTGIHSREWVTQASGVWFAKKITKDYGQDPTFTAVLDNMD 214

  Fly   205 WYIIPVLNTDGFAYSHEVERLWRKSRLPSDPTGE-CIGTDLNRNFDYLWMLTGAESDPCSQLYAG 268
            .::..|.|.|||||:|:..|:|||:|  |...|. |:|.|.|||:|..:.:.||.|:|||:.|.|
  Rat   215 IFLEIVTNPDGFAYTHKTNRMWRKTR--SHTQGSLCVGVDPNRNWDAGFGMAGASSNPCSETYRG 277

  Fly   269 PSPESDPEISQLTAYINNSIPEGTIKIYISLHSYGQYVLSPWGHTALEFPEHYPQMMHVAKGFSD 333
            ..|.|:.|:..:..::.:   .|.||.:||:|||.|.:|.|:|:|:...|:. .::..:||....
  Rat   278 KFPNSEVEVKSIVDFVTS---HGNIKAFISIHSYSQLLLYPYGYTSEPAPDQ-AELDQLAKSAVT 338

  Fly   334 ALYRRYGTVFTYGSSATTLYEVSGSGKEWAYAVKNIKIHYTIELRDKGELGFVLPPEDIIPVARE 398
            ||...:||.|.|||...|:|:.|||..:|.|: :.||..:|.||||.|..||:||...|||.|.|
  Rat   339 ALTSLHGTKFKYGSIIDTIYQASGSTIDWTYS-QGIKYSFTFELRDTGLRGFLLPASQIIPTAEE 402

Fly 399 398
Rat 403 402

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.