DRSC/TRiP Functional Genomics Resources

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Protein Alignment vvl and YOX1

DIOPT Version :9

Sequence 1:NP_001303384.1 Gene:vvl / 38752 FlyBaseID:FBgn0086680 Length:742 Species:Drosophila melanogaster
Sequence 2:NP_013685.1 Gene:YOX1 / 854981 SGDID:S000004489 Length:385 Species:Saccharomyces cerevisiae


Alignment Length:454 Identity:80/454 - (17%)
Similarity:159/454 - (35%) Gaps:102/454 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    95 THHTHHLPAAAAVASAADTVKQEMSHLSQQTRIQQGMASPHAAWHAPHAGHYAPTGGSPLQYHHA 159
            :..|..||:.:::.|..:.         ..:.:.....:|..::|....|    |...|     .
Yeast     2 SQETKMLPSLSSLLSGTEI---------SSSPVSPSFTNPRTSFHLDDRG----TIKLP-----P 48

  Fly   160 MNGMLHHPAHAVAAAHHQSVAPLHHTLRGESPQLHIHHHMGGGDRDAISGGEEDTPTS-DDLEAF 223
            :|..::.|....:|..| :|..||.........:..|..........::..:|....| ::|...
Yeast    49 LNTSINRPRSVESALRH-TVTSLHENSSAYGDDMLKHTQSDSALSSQLNSSQETVDESHENLLLT 112

  Fly   224 AKQFKQRRIKLGFTQADVGLALGTLYGNVF---SQTTICRFEALQLSFKNMCKLKPLLQKWLEEA 285
            ....|:|...:...:.|:...|......:.   |:.....|..:..|.:...|.:|         
Yeast   113 PLNSKKRDYSVSSKKNDILTPLSAAKSIIIPSASKEKRRAFAFITHSQETFPKKEP--------- 168

  Fly   286 DSTTGSPTSIDKIAAQGRKRKKRTSIEVSVKGALEQHFHKQPKPSAQEITSLADSLQLEKEVVRV 350
                    .||......|||::.:|.|:|:   |:..|.|.|.||.::...||:|..:.::.|::
Yeast   169 --------KIDNAPLARRKRRRTSSQELSI---LQAEFEKCPAPSKEKRIELAESCHMTEKAVQI 222

  Fly   351 WFCNRRQKEKRMTPPNTLGGDMMDGM-PPGHMHHGGYHPHHDMHGSPMGTHSHSHSPPMLSPQNM 414
            ||.|:||..||.....:....::..: ||.        |..|:|.:|                  
Yeast   223 WFQNKRQAVKRQRIATSKSTTIIQTVSPPS--------PPLDVHATP------------------ 261

  Fly   415 QSSAVAAHQLAAHXQSEIQESNSAAAASTPASLNSLSQQQQQQQQQQQQQHQQQQQHQQQQHTPN 479
                     ||:..:::|....|:.:.|:.:|               ..::...:.|.......:
Yeast   262 ---------LASRVKADILRDGSSCSRSSSSS---------------PLENTPPRPHHSLNRRSS 302

  Fly   480 TPSSSAGSSATMTSQVMSPQ----SPLGSSSAGNQANNNNNNNNNNNSSTNNNNNNNNNEEQVK 539
            |||.....:.|..   ::||    :|: .:|..::.|...|:.:::.|......:|.:...:.|
Yeast   303 TPSIKRSQALTFH---LNPQKKTLTPV-KTSPNSRVNKLINSIDHSPSKAKRPVSNPSGSPKRK 362

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vvlNP_001303384.1 POU 212..286 CDD:197673 12/77 (16%)
Homeobox 307..360 CDD:278475 18/52 (35%)
YOX1NP_013685.1 COG5576 126..267 CDD:227863 40/195 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 48 1.000 Inparanoid score I1861
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3844
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.080

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