DRSC/TRiP Functional Genomics Resources

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Protein Alignment vvl and Pou5f2

DIOPT Version :9

Sequence 1:NP_001303384.1 Gene:vvl / 38752 FlyBaseID:FBgn0086680 Length:742 Species:Drosophila melanogaster
Sequence 2:NP_083591.1 Gene:Pou5f2 / 75507 MGIID:1922757 Length:329 Species:Mus musculus


Alignment Length:360 Identity:105/360 - (29%)
Similarity:159/360 - (44%) Gaps:72/360 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    60 SSPSPNGQGNGGGLGLGSGSGLGSWSALHPDPWMQTHHTHHLPAAAAVASAADTVKQEMSHLSQQ 124
            |:..|....:||||.:.:.:.|.|.:|                               .|.|..:
Mouse     7 SNVFPLSGNSGGGLEVDTPTWLSSQAA-------------------------------TSRLMVR 40

  Fly   125 TRIQQGMASPHAAWHAPHAGHYAPTGGSPLQYHHAMNGMLHHPAHAVAAAHHQSVAPLHHTLRGE 189
            ..:..|:......|.       .|.|.||.::...:.......|.|.:.:..:...|..:.....
Mouse    41 PSMGPGICPGPEVWG-------VPLGSSPYEFRGGIAPYRACEARAWSQSSSEDTCPGPYIALRY 98

  Fly   190 SPQLHIHHHMGGGDRDAISGGEEDTPTSDDLEAFAKQFKQRRIKLGFTQADVGLALGTLYGNVFS 254
            .|.|.:              .|:.:....::|..||:.:|:|:.||::|||||.|:|.::|.|.|
Mouse    99 MPNLAL--------------PEDVSAIQKEMEQLAKELRQKRMTLGYSQADVGFAVGAMFGKVLS 149

  Fly   255 QTTICRFEALQLSFKNMCKLKPLLQKWLEEAD--STTGSPTSIDKIAAQGRKRKKRTSIEVSVKG 317
            |||||||||.|||..||.||:|||:.||||.|  :..|. ..::.|..|.||| :|.|.|..:..
Mouse   150 QTTICRFEAQQLSLANMWKLRPLLKMWLEEVDEKNLLGI-CRMEMILEQARKR-RRASRERRIGS 212

  Fly   318 ALEQHFHKQPKPSAQEITSLADSLQLEKEVVRVWFCNRRQKEKRMTPPNTLG--------GDMMD 374
            .||:.|.:.|:|:.|:|:.:|..|:|:|::|:|||.||.|...  .|.|...        |....
Mouse   213 NLEKLFLQCPEPTPQQISYIAGRLRLQKDLVQVWFSNRSQMGS--WPTNDTSRREDVGATGSPFP 275

  Fly   375 GMPPGHMHHGGYH---PHHDMHGSPMGTHSHSHSP 406
            |.|.......|.|   ||::  ||.: |..:|.:|
Mouse   276 GPPVCFPMAPGLHFDFPHYE--GSCL-TPLYSSTP 307

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vvlNP_001303384.1 POU 212..286 CDD:197673 40/73 (55%)
Homeobox 307..360 CDD:278475 21/52 (40%)
Pou5f2NP_083591.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..24 6/16 (38%)
Pou 113..181 CDD:278582 40/67 (60%)
Homeobox <214..250 CDD:278475 15/35 (43%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167847039
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3802
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11636
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.840

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